View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7648_low_10 (Length: 489)
Name: NF7648_low_10
Description: NF7648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7648_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 20 - 478
Target Start/End: Complemental strand, 700316 - 699858
Alignment:
| Q |
20 |
aagtggaaggccgatcaaatcatgacctgtgagctcaagcaagcaagtgggttcctgaggtactcttgagtggttctggtaagcaaggttaagtgctgct |
119 |
Q |
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| T |
700316 |
aagtagaaggccgatcaaatcatgacctgtgagctcaagcaagcaagtgggttcctgaggtactcttgagtggttctggtaagcaaggttaagtgctgct |
700217 |
T |
|
| Q |
120 |
ctatgtgtaagaacaaagacctcagtttcagtgatttcaaatgctccatattttccatcaggcaaaatccatgcatttgtttgaccatacatagtctcgg |
219 |
Q |
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| T |
700216 |
ctatgtgtaagaacaaagacctcagtttcagtgatttcaaatgctccatattttccatcaggcaaaacccatgcatttgtttgaccatacatagtctcgg |
700117 |
T |
|
| Q |
220 |
gtctcaacatcgcagcagcaagaaaaaccttctttccttcaagagccttaaatttatcaggaaaaggcgataccaactccatcttgataatcgtatactc |
319 |
Q |
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| T |
700116 |
gtctcaacgtcgcagcagcaagaaaaaccttctttccttcaagagccttaaatttatcaggaaaaggcgataccaactccatcttgataatcatatactc |
700017 |
T |
|
| Q |
320 |
ttgaggctgaacaccttcaccactagccctatcatgatcagcacacggttgtccatccaaaggcgaaaaaattgtatacctaacatctttaacaaccttc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
700016 |
ttgaggctgaacaccttcaccactagccctatcatgatcagcacacggttgtccatccaaaggcgaaaaaattgtatacctaacatctttaacaaccttc |
699917 |
T |
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| Q |
420 |
cccaatgacttcaatttcctcatttgccacctaacaaaagaatcaaaataagggttcat |
478 |
Q |
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| T |
699916 |
cccaatgacttcaatttcctcatttgccacctaacgaaagaatcaaaataagggttcat |
699858 |
T |
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Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 24 - 478
Target Start/End: Original strand, 23261811 - 23262265
Alignment:
| Q |
24 |
ggaaggccgatcaaatcatgacctgtgagctcaagcaagcaagtgggttcctgaggtactcttgagtggttctggtaagcaaggttaagtgctgctctat |
123 |
Q |
| |
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||||| ||||||||||| ||||| || ||||||||||| ||||| |||| ||||||||| || ||||| || ||||||||||| ||||| ||||| |||| |
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| T |
23261811 |
ggaagcccgatcaaatcctgacccgtaagctcaagcaaacaagtcggtttctgaggtaccctagagtgattttggtaagcaagattaagcgctgccctat |
23261910 |
T |
|
| Q |
124 |
gtgtaagaacaaagacctcagtttcagtgatttcaaatgctccatattttccatcaggcaaaatccatgcatttgtttgaccatacatagtctcgggtct |
223 |
Q |
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| | | |||||| ||||| |||||| | || ||||| || |||||||| ||||||||||| | ||| |||||||||||||||||||||||||| || || |
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| T |
23261911 |
gcgctacaacaaacacctccgtttcattaatctcaaaagccccatatttcccatcaggcaacacccaagcatttgtttgaccatacatagtctcaggcct |
23262010 |
T |
|
| Q |
224 |
caacatcgcagcagcaagaaaaaccttctttccttcaagagccttaaatttatcaggaaaaggcgataccaactccatcttgataatcgtatactcttga |
323 |
Q |
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|||| |||| ||||||||||||||||||||||| || | | ||||||| || ||||||||||| || |||| ||||||||| ||||||||||||||||| |
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| T |
23262011 |
caacgtcgccgcagcaagaaaaaccttctttccctccaaaaccttaaacttctcaggaaaaggagaaaccacctccatcttaataatcgtatactcttgc |
23262110 |
T |
|
| Q |
324 |
ggctgaacaccttcaccactagccctatcatgatcagcacacggttgtccatccaaaggcgaaaaaattgtatacctaacatctttaacaaccttcccca |
423 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||||| ||||||||||| || |
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| T |
23262111 |
ggctgaacaccttcaccactagccctatcatgatccgcacaaggctgtccatccaatggcgaaaaaactgtatacctaacatccttaacaaccttaccag |
23262210 |
T |
|
| Q |
424 |
atgacttcaatttcctcatttgccacctaacaaaagaatcaaaataagggttcat |
478 |
Q |
| |
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| | |||||| |||||||| |||||||||||||||| |||||||||||| ||||| |
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|
| T |
23262211 |
acgccttcaacttcctcatatgccacctaacaaaagcatcaaaataaggattcat |
23262265 |
T |
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