View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7648_low_11 (Length: 478)
Name: NF7648_low_11
Description: NF7648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7648_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 20 - 462
Target Start/End: Original strand, 41307902 - 41308342
Alignment:
| Q |
20 |
taccaatatcattgaaacgttagtttcaataaatttggaaggaatagatactccttgattctaagaagctgcatggtccatcctcttgtggtttaaactt |
119 |
Q |
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| T |
41307902 |
taccaatatcattgaaacgttagtttcaataaatttggaaggaatagatactccttgattctaagaagctgcatggtccatcctcttgtggtttaaactt |
41308001 |
T |
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| Q |
120 |
taaagtttagcaaactcctaggaaattactaggtaacaatattgttgtcggatactagttcttttacttccttaaaaactccgaaattttttcatagctt |
219 |
Q |
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| T |
41308002 |
taaagtttagcaaactcctaggaaattactaggtaacaatattgttgtcggatactagttcttttacttccttaaaaactccgaaattttttcatagctt |
41308101 |
T |
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| Q |
220 |
tcaattacaaccgaaaaattttagcctttaattttggttcctagctatttagttttatttttatgatagtatatagtatatttgatagtatgaagatgtg |
319 |
Q |
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| T |
41308102 |
tcaattacaaccgaaaaattttagcctttaattttggttcctagctatttagttttatttttatgatagtatatagtatatttgatagtatgaagatgtg |
41308201 |
T |
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| Q |
320 |
aaatttctcacacatnnnnnnnnnnnggttcaatgtattctcgtagtttatgtattactctaagccttgtgtttgggttcattgttttgatggcgtttgc |
419 |
Q |
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| T |
41308202 |
aaatttctcacaca--aaaaaaaaaaggctcaatgtattctcgtagtttatgtattactctaagccttgtgtttgggttcattgttttgatggcatttgc |
41308299 |
T |
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| Q |
420 |
acacattttctacttcttatggtggaaaaagagaagaacacac |
462 |
Q |
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| T |
41308300 |
acacattttctacttcttatggtggaaaaagagaagaacacac |
41308342 |
T |
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