View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7648_low_13 (Length: 452)
Name: NF7648_low_13
Description: NF7648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7648_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Original strand, 8110180 - 8110605
Alignment:
| Q |
19 |
agagtctcgtgctagactctttgaaacaaaaagatgaaacatatagctttttctatgacttagattaaaagtttcaactctataagctacaaaacattta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8110180 |
agagtctcgtgctagactctttgaaacaaaaggatgaaacatatagctttttctatgacttagattaaaagtttcaactctataagctacaaaacattta |
8110279 |
T |
|
| Q |
119 |
aaggagtgagtactcaccttgacttcatagtgttccttttagttgctggaccctggcataggaatctctaccaaacagccacgcaagtaataagcaactt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8110280 |
aaggagtgagtactcaccttgacttcatagtgttccttttagttgctggaccctggcataggaatctctaccaaacagccacgcaagtaataagcaactt |
8110379 |
T |
|
| Q |
219 |
tgttggttacttccaagccctattctttgaagttttattggtgctgtgaattatgattcatggctttccacaactacatatactgttaatgtataataaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8110380 |
tgttggttacttccaagccctattctttgaagttttattggtgctgtgaattatgattcatggctttccacaactacatatactgttaatgtataataaa |
8110479 |
T |
|
| Q |
319 |
gctcaaagggttgtggaagcagacccccacttgtaatgcacgctttgaaatagacttaacagttcacgtgtttgtcataattaaatagcatactataatt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8110480 |
gctcaaagggttgtggaagcagacccccacttgtaatgcacgctttgaaatagacttaacagttcacgtgtttgtcataattaaatagcatactataatt |
8110579 |
T |
|
| Q |
419 |
gaaggaagaagcatataagtattatc |
444 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
8110580 |
gaaggaagaagcatataagtattatc |
8110605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University