View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7648_low_14 (Length: 441)
Name: NF7648_low_14
Description: NF7648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7648_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 40635120 - 40634695
Alignment:
| Q |
1 |
atcactgtcatttatcaaatgagatgctaaaccgtgatcaggtacagattcacaaaatggtcaaaattatgttaagaactcagatgttaccctacctgaa |
100 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40635120 |
atcactgtcatttatcaaatgaaatgctaaactgtgatcaggtacagattcacaaaatggtcaaaattatgttaagaactcagatgttaccctacctgaa |
40635021 |
T |
|
| Q |
101 |
tttctgttctcaaacagccatgtagagctaccactgtatacccgaattggcgaagaacagttccaacttttacatactgttgcgatggaaatttgtgaca |
200 |
Q |
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| T |
40635020 |
tttctgttctcaaacagccatgtagagctaccactgtatacccgaattggcgaagaacagttccaacttttacatactgttgcgatggaaatttgtgaca |
40634921 |
T |
|
| Q |
201 |
gtacctagaatgccttggctcccaacttgcatgtaatgcctacacaattcaaaacacagccatttgaagatcaagatattcttctaagcgaattaacaac |
300 |
Q |
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| T |
40634920 |
gtacctagaatgccttggctcccaacttgcatgtaatgcctacacaattcaaaacacagccatttgaagatcaagatattcttctaagcgaattaacaat |
40634821 |
T |
|
| Q |
301 |
tgatatatgatca-tttgaataaataaatatttaggcacaaaagacttatgaatcatttagctttgtttgacttagtacgcataatttgtggtatccgac |
399 |
Q |
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| T |
40634820 |
tgatatatgatcattttgaataaataaatatttaggcacaaaagacttatgaatcatttagctttgtttgacttagtacgcataatttgtggtatccgac |
40634721 |
T |
|
| Q |
400 |
atttatacaagaatttctcatgaagg |
425 |
Q |
| |
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| T |
40634720 |
atttatacaagaatttctcatgaagg |
40634695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 61 - 256
Target Start/End: Complemental strand, 40646892 - 40646698
Alignment:
| Q |
61 |
tcaaaattatgttaagaactcagatgttaccctacctgaatttctgttctcaaacagccatgtagagctaccactgtatacccgaattggcgaagaacag |
160 |
Q |
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||||| |||||||||||||||| || ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40646892 |
tcaaatttatgttaagaactcaaatattatg-tacctgaatttctgttctcaaacaaccatgtagagctaccactgtatacccgaattgacgaagaacag |
40646794 |
T |
|
| Q |
161 |
ttccaacttttacatactgttgcgatggaaatttgtgacagtacctagaatgccttggctcccaacttgcatgtaatgcctacacaattcaaaaca |
256 |
Q |
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| T |
40646793 |
ttccaacttttacatactgttgacatggaaatttgtgacagtacctaaaatgccttggctcccaacttccatgtaatgcctgcacagttcaaaaca |
40646698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 93 - 255
Target Start/End: Original strand, 4780843 - 4781005
Alignment:
| Q |
93 |
tacctgaatttctgttctcaaacagccatgtagagctaccactgtatacccgaattggcgaagaacagttccaacttttacatactgttgcgatggaaat |
192 |
Q |
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|||||||||||| | ||||||||||||||| ||||||||||| || || || ||||| |||||||||| ||||||||||||||| || ||| |||||||| |
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| T |
4780843 |
tacctgaatttcggatctcaaacagccatgcagagctaccacggtgtagccaaattgacgaagaacagctccaacttttacatattgctgccatggaaat |
4780942 |
T |
|
| Q |
193 |
ttgtgacagtacctagaatgccttggctcccaacttgcatgtaatgcctacacaattcaaaac |
255 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||| |
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| T |
4780943 |
ttgtgacagtacctagaatgccttggctcccaacttgcatgcaacgcctggccaattcaaaac |
4781005 |
T |
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