View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7648_low_15 (Length: 421)
Name: NF7648_low_15
Description: NF7648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7648_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 43516468 - 43516180
Alignment:
| Q |
19 |
gttgttaccttacaaagcaactaagtattaactagggattcgatttctcctgttttacgttggattcatccaacgatatatattaagtgagtattgtcat |
118 |
Q |
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| T |
43516468 |
gttgttaccttacaaagcaattaagtattaactagggattcaatttctcctattttacgttggattcatccaacgatatatattaagtgagtattgtcgt |
43516369 |
T |
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| Q |
119 |
ttannnnnnnnnnnnnnggtgtggactgtgtatcttcaccataattgaatagactaatccctcaaacggttagaattgcaatgtgtgacaaagctcactc |
218 |
Q |
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| T |
43516368 |
ttattttttatttttttggtgtggactgtgtatcttcaccacaattgaatagactaatccatcgaacggttagaattgcaatgtgtaacaaagctcactc |
43516269 |
T |
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| Q |
219 |
acaaaatatttgattggtgttagatttgaaccatgacttccgattaagttgcaagagtttgagtcaataaaagggtgcatggaaggttt |
307 |
Q |
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| T |
43516268 |
acaaaatatttgattggtgttagatttgaaccatgacttccgattaagttgcaagagtttgagtcaataaaagggtgcatgcaaggttt |
43516180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 351 - 412
Target Start/End: Complemental strand, 43516181 - 43516120
Alignment:
| Q |
351 |
ttcctcttccttgcattgagttttttcttttccttcttgtcttcataatcacaagtctctgc |
412 |
Q |
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| T |
43516181 |
ttcctcttccttgcattgagttttttcttttccttcttgtcttcataatcacaagtctctgc |
43516120 |
T |
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