View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7648_low_16 (Length: 371)
Name: NF7648_low_16
Description: NF7648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7648_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 48267885 - 48267653
Alignment:
| Q |
1 |
gatccacta-ccaaatcaaaataacaaccacccaaaaatcactctccgtgtaaacaccaacaacacccaagactcaannnnnnnnncccaactcatcaca |
99 |
Q |
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| T |
48267885 |
gatccactaaccaaatcaaaataacaaccacccaaaaatcactctccgtgtaaacaccaacaacacccaagactcaatttttttttcccaactcatcaca |
48267786 |
T |
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| Q |
100 |
atataaaaaactgcacgcataacccatttgagtcattgtttnnnnnnnnnnnnnnnnntacaaaacccatcaaaagacacatacccttttcaaatttaga |
199 |
Q |
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| T |
48267785 |
atataaaaaactgcacgcataacccatttgagtcattgtttaaaaaaacctaaaaaaatacaaaacccatcaaaagacacatacccttttcaaatttaga |
48267686 |
T |
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| Q |
200 |
ggtaaaaataccattactaagaggaaaacacat |
232 |
Q |
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||| ||||||||||||||||||||||||||||| |
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| T |
48267685 |
ggtgaaaataccattactaagaggaaaacacat |
48267653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 260 - 353
Target Start/End: Complemental strand, 48267619 - 48267526
Alignment:
| Q |
260 |
cacattaacagctcaaccattaagaaagtaaagatcttacacaaacatggagtgtactagaaatgctgaacagtggttgctatgacagtgtaat |
353 |
Q |
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| T |
48267619 |
cacattaacagctcaaccattaagaaagtaaagatcttacacaaacatggagtgtactagaaatgctgaacagtggttgctatgacagtgtaat |
48267526 |
T |
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