View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7648_low_18 (Length: 318)
Name: NF7648_low_18
Description: NF7648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7648_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 49 - 315
Target Start/End: Original strand, 7036693 - 7036959
Alignment:
| Q |
49 |
ttttcagcttttcaatttaaacgcctttactaaacatgagcatctcgaaatggagtactatgagctatcaaagaaaatggtggattataccgcaggtgtt |
148 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| |
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| T |
7036693 |
ttttcagcttttcaatttttacgcctttactaaacatgagcatctcgaaatggagtactattagctatcaaagaatatggttgattataccgcaggtgtt |
7036792 |
T |
|
| Q |
149 |
ccactagttcttaaagcattagctaaccttcttcgtgggaaagataaagtcatatgggaaaaccaatcaaggaatcttaaaatagagcaaattgaaaatg |
248 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
7036793 |
ccactggttcttaaagctttagctaaccttcttcgtgggaaagataaagccatatgggaaacccaatcaaggaatcttaaaatagagcagattgaaaatg |
7036892 |
T |
|
| Q |
249 |
tccacgatgtttttagattgatatacactaatcttgattattatgaaaagattatattcttcgacat |
315 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7036893 |
tccatgatgtttttagattgatatacactaatcttgattattatgaaaagattatattcttagacat |
7036959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 49 - 315
Target Start/End: Complemental strand, 7075269 - 7075003
Alignment:
| Q |
49 |
ttttcagcttttcaatttaaacgcctttactaaacatgagcatctcgaaatggagtactatgagctatcaaagaaaatggtggattataccgcaggtgtt |
148 |
Q |
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||||||||||||||| || | ||||||| |||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7075269 |
ttttcagcttttcaacttgcatgcctttaataaacaaaagcatcttgaaatggagtactataagctatcaaagaaaatggtggattataccgcaggtgtt |
7075170 |
T |
|
| Q |
149 |
ccactagttcttaaagcattagctaaccttcttcgtgggaaagataaagtcatatgggaaaaccaatcaaggaatcttaaaatagagcaaattgaaaatg |
248 |
Q |
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| T |
7075169 |
ccactggttcttaaagctttagctaaccttcttcgtgggaaagataaagccatatgggaaagccaatcaaggaatcttaaaatagagcagattgaaaatg |
7075070 |
T |
|
| Q |
249 |
tccacgatgtttttagattgatatacactaatcttgattattatgaaaagattatattcttcgacat |
315 |
Q |
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| T |
7075069 |
tccacgatgtttttagattgatatacactaatcttgattattatgaaaagatcatattcttagacat |
7075003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 49 - 306
Target Start/End: Original strand, 7030984 - 7031241
Alignment:
| Q |
49 |
ttttcagcttttcaatttaaacgcctttactaaacatgagcatctcgaaatggagtactatgagctatcaaagaaaatggtggattataccgcaggtgtt |
148 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
7030984 |
ttttcagcttttcaatttgcacgcctttactaaacatgagcatctcgaaatggagtactatgagctatcaaagaagatggtcgattataccgcaggtgtt |
7031083 |
T |
|
| Q |
149 |
ccactagttcttaaagcattagctaaccttcttcgtgggaaagataaagtcatatgggaaaaccaatcaaggaatcttaaaatagagcaaattgaaaatg |
248 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||||| | ||||||||||| ||| ||| || ||| ||||||||||| |||||||||| |
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| T |
7031084 |
ccactagttcttaaagctttagctaaccttctttgtgggaaagataaggacatatgggaaagccaggcaaagattctgaaaatagagcagattgaaaatg |
7031183 |
T |
|
| Q |
249 |
tccacgatgtttttagattgatatacactaatcttgattattatgaaaagattatatt |
306 |
Q |
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|||| | ||| |||||||||||||||||||||||||||| | ||||||||| |||||| |
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| T |
7031184 |
tccatgttgtatttagattgatatacactaatcttgattctcatgaaaagaatatatt |
7031241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 55 - 306
Target Start/End: Original strand, 7023601 - 7023852
Alignment:
| Q |
55 |
gcttttcaatttaaacgcctttactaaacatgagcatctcgaaatggagtactatgagctatcaaagaaaatggtggattataccgcaggtgttccacta |
154 |
Q |
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|||||||||||| | |||||| |||||||| ||||| |||||||||||| ||||||||| ||| ||||| ||| | | | ||||||||||| | |
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| T |
7023601 |
gcttttcaatttgcatgcctttgctaaacataagcataatgaaatggagtaccgtgagctatcggagaggatggtcgatcttgctgaaggtgttccacaa |
7023700 |
T |
|
| Q |
155 |
gttcttaaagcattagctaaccttcttcgtgggaaagataaagtcatatgggaaaaccaatcaaggaatcttaaaatagagcaaattgaaaatgtccacg |
254 |
Q |
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||||||| | | |||| ||| |||| ||||||||||||||| ||||||||||| || | |||||||| | ||||||| ||| | | || |||||| | |
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| T |
7023701 |
gttcttacaactttaggtaagtatctttgtgggaaagataaagccatatgggaaagcctagcaaggaatatcaaaatagggcagactagaactgtccatg |
7023800 |
T |
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| Q |
255 |
atgtttttagattgatatacactaatcttgattattatgaaaagattatatt |
306 |
Q |
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|||| | ||||||||| |||||||||||||||||| ||||||||| |||||| |
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| T |
7023801 |
atgtatctagattgatgtacactaatcttgattatcatgaaaagaatatatt |
7023852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 4009720 - 4009673
Alignment:
| Q |
89 |
catctcgaaatggagtactatgagctatcaaagaaaatggtggattat |
136 |
Q |
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||||| ||||||||||||||||| |||||||||||| |||| |||||| |
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| T |
4009720 |
catcttgaaatggagtactatgatctatcaaagaaagtggtcgattat |
4009673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 122
Target Start/End: Complemental strand, 3817320 - 3817287
Alignment:
| Q |
89 |
catctcgaaatggagtactatgagctatcaaaga |
122 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
3817320 |
catcttgaaatggagtactatgagctatcaaaga |
3817287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 122
Target Start/End: Complemental strand, 4002028 - 4001995
Alignment:
| Q |
89 |
catctcgaaatggagtactatgagctatcaaaga |
122 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
4002028 |
catcttgaaatggagtactatgagctatcaaaga |
4001995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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