View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7648_low_2 (Length: 821)
Name: NF7648_low_2
Description: NF7648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7648_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 753; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 18 - 804
Target Start/End: Original strand, 2573843 - 2574627
Alignment:
| Q |
18 |
acatcacaagtaaccaaggttggagtcaagcagtgtctgaatttagctgggataacaaatttgttggagctcaaacattactaacacaggtattcatatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2573843 |
acatcacaagtaaccaaggttggagtcaagcagtgtctgaatttagctgggataacaaatttgttggagctcaaacattactaacacaggtattcatatt |
2573942 |
T |
|
| Q |
118 |
tatagctaaaccattgactaccatatagcaaaactgtattctttagtaaacattagttcaaaggaaaaaattaactaattaattctaattgttttccttt |
217 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2573943 |
tatagttaaaccattgactaccatatagcaaaactgtattctttagtaaacattagttcaaaggaaaaaattaactaattaattctaattgttttccttt |
2574042 |
T |
|
| Q |
218 |
catcttttgtcaaggaattttatggcgggagggaagagttagccaagtttcagactgatgctgaatcatttatatgtgcattgatgccaggaagtagctc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2574043 |
catcttttgtcaaggaattttatggcgggagggaagagttagccaagtttcagactgatgctgaatcatttatatgtgcattgatgccaggaagtagctc |
2574142 |
T |
|
| Q |
318 |
tctacaaattaaaacaactccaggtatacatatagactatatttaatgattgcaaagtaatagtacatttaacatatgatggaatgagctcatttagttt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2574143 |
tctacaaattaaaacaactccaggtatacatatagactatatttaatgattgcaaagtaatagtacatttaacatatgattgaatgagctcatttagttt |
2574242 |
T |
|
| Q |
418 |
attatttattgttaactcaggtgggcttctgtatattagagatagcagtaatttgcaatataccacaacctcaaccatggtactattcattttctccaaa |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2574243 |
attatttattgttaactcaggtgggcttctgtatattagagatagcagtaatttgcaatataccacaacctcaaccatggtactattcattttctccaaa |
2574342 |
T |
|
| Q |
518 |
atcttaaacaaaaaccatattgatggaatacactgtggctctgcccatttttcaccctctgagattagagcctttgcaaaattacaggtatatatacata |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2574343 |
atcttaaacaaaaaccatattgatggaatacactgtggctctgcccatttttcaccctctgagattagagcctttgcaaaattacaggtatat----ata |
2574438 |
T |
|
| Q |
618 |
cttatctaattttacttcacaaatattaagctcatttattaattttcttaattttggttcatgactaaaagttgaatgtgtac--attacataggtggac |
715 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2574439 |
cttatctaattttacttcacaaatattaagctcatttattaattttcttaattttggttcatgactaaaagttgaatgtgtacatattacataggtggac |
2574538 |
T |
|
| Q |
716 |
tacatactaggaaacaatcccatgaagatgtcatatatggtgggatatgggagtaaatatccaaaacaattacatcacagaggttcttc |
804 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2574539 |
tacatactaggaaacaatcccatgaagatgtcatatatggtgggatatgggagtaaatatccaaaacaattacatcacagaggttcttc |
2574627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 681 - 804
Target Start/End: Original strand, 2564610 - 2564733
Alignment:
| Q |
681 |
actaaaagttgaatgtgtacattacataggtggactacatactaggaaacaatcccatgaagatgtcatatatggtgggatatgggagtaaatatccaaa |
780 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
2564610 |
actaaaaattgaatgtgtacataacataggtggactacatactaggtaacaatcccatgaagatgtcatacatggtgggatatggaagtaaatatccaaa |
2564709 |
T |
|
| Q |
781 |
acaattacatcacagaggttcttc |
804 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
2564710 |
gcaattacatcacagaggttcttc |
2564733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 423 - 608
Target Start/End: Original strand, 2564353 - 2564538
Alignment:
| Q |
423 |
ttattgttaactcaggtgggcttctgtatattagagatagcagtaatttgcaatataccacaacctcaaccatggtactattcattttctccaaaatctt |
522 |
Q |
| |
|
||||| ||||||||||||| ||| |||||| ||||||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2564353 |
ttattattaactcaggtggacttttgtatactagagatagtaataatttgcaatacaccacgacctcaaccatggtactattcattttctccaaaatcct |
2564452 |
T |
|
| Q |
523 |
aaacaaaaaccatattgatggaatacactgtggctctgcccatttttcaccctctgagattagagcctttgcaaaattacaggtat |
608 |
Q |
| |
|
||||||||| ||||||||||||| || ||||||||| || |||| | ||||||| |||| |||||||||||||| |||||||| |
|
|
| T |
2564453 |
aaacaaaaataatattgatggaattcattgtggctctaccaatttcacctcctctgaaattaaagcctttgcaaaatcacaggtat |
2564538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 2563993 - 2564094
Alignment:
| Q |
18 |
acatcacaagtaaccaaggttggagtcaagcagtgtctgaatttagctgggataacaaatttgttggagctcaaacattactaacacaggtattcatatt |
117 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||| |||||| || ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||| |
|
|
| T |
2563993 |
acatcacagataaccaaggttggaatcaggcagcgtctgagttcagctgggataacaaatttgttggagttcaaacattactaacacaggtctttatatt |
2564092 |
T |
|
| Q |
118 |
ta |
119 |
Q |
| |
|
|| |
|
|
| T |
2564093 |
ta |
2564094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 230 - 345
Target Start/End: Original strand, 2564173 - 2564288
Alignment:
| Q |
230 |
aggaattttatggcgggagggaagagttagccaagtttcagactgatgctgaatcatttatatgtgcattgatgccaggaagtagctctctacaaattaa |
329 |
Q |
| |
|
||||||| ||||| |||| | | || ||||| ||| |||| | ||||| |||||||||||||||||| ||||||| ||||||| ||||||||| ||||| |
|
|
| T |
2564173 |
aggaattctatggtgggaagaaggacttagcaaagattcatagtgatggtgaatcatttatatgtgctttgatgcaaggaagttactctctacagattaa |
2564272 |
T |
|
| Q |
330 |
aacaactccaggtata |
345 |
Q |
| |
|
|| ||| || |||||| |
|
|
| T |
2564273 |
aaaaacacctggtata |
2564288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University