View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7648_low_20 (Length: 254)
Name: NF7648_low_20
Description: NF7648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7648_low_20 |
 | |
|
| [»] scaffold0179 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 50385990 - 50385757
Alignment:
| Q |
1 |
tttgtcatacaaatgaccagcgatcttcacattaagcacatataatccaagtggacttgctacacttccaaaattatacaaagttgcataatatttaagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50385990 |
tttgtcatacaaatgaccagcgatcttcacattaagcacatataatccaaggggacttgctacacttccaaaattatacaaagttgcataatatttaagt |
50385891 |
T |
|
| Q |
101 |
ccaaaaagttctgatataatggcaaaaagtaatggccattgagcaccaaaacaaaatccaataatcactgaagctacataaagaccctctggcacatcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
50385890 |
ccaaaaagttctgatataatggcaaaaagtaatggccattgagcaccaaaacaaaatccaataatcactgaagctacgtagagaccctctggcacatcaa |
50385791 |
T |
|
| Q |
201 |
atgctatcaaaaggtgtcccacacaagagacaaa |
234 |
Q |
| |
|
||||||||| ||||||||| ||||| |||||||| |
|
|
| T |
50385790 |
atgctatcagaaggtgtccaacacatgagacaaa |
50385757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 50394409 - 50394176
Alignment:
| Q |
1 |
tttgtcatacaaatgaccagcgatcttcacattaagcacatataatccaagtggacttgctacacttccaaaattatacaaagttgcataatatttaagt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50394409 |
tttgtcatacaaatgaccagtgatcttcacattaagcacatataatccaagtggacttgctacacttccaaaattatacaaagttgcataatatttaagt |
50394310 |
T |
|
| Q |
101 |
ccaaaaagttctgatataatggcaaaaagtaatggccattgagcaccaaaacaaaatccaataatcactgaagctacataaagaccctctggcacatcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
50394309 |
ccaaaaagttctgatataatggcaaaaagtaatggccattgagcaccaaaacaaaatccaataatcactgaagctacgtagagaccctctggcacatcaa |
50394210 |
T |
|
| Q |
201 |
atgctatcaaaaggtgtcccacacaagagacaaa |
234 |
Q |
| |
|
||||||||| ||||||||| ||||| |||||||| |
|
|
| T |
50394209 |
atgctatcagaaggtgtccaacacatgagacaaa |
50394176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 50391135 - 50390902
Alignment:
| Q |
1 |
tttgtcatacaaatgaccagcgatcttcacattaagcacatataatccaagtggacttgctacacttccaaaattatacaaagttgcataatatttaagt |
100 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||| |||| |||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50391135 |
tttgtcatacaaatgaccagtgatcgccacattaagcacatataagccaattggacttgttatacttccaaaattatacaaagttgcataatatttaagt |
50391036 |
T |
|
| Q |
101 |
ccaaaaagttctgatataatggcaaaaagtaatggccattgagcaccaaaacaaaatccaataatcactgaagctacataaagaccctctggcacatcaa |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||| |
|
|
| T |
50391035 |
ccaaagagttctgatataatggcaaaaagtaacggccattgagcaccaaaacaaaatccgataataactgaagctacatagagaccctgtggcacatcaa |
50390936 |
T |
|
| Q |
201 |
atgctatcaaaaggtgtcccacacaagagacaaa |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
50390935 |
atgctatcaaaaggtgtcccacacaagagacaaa |
50390902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 50408019 - 50407846
Alignment:
| Q |
1 |
tttgtcatacaaatgaccagcgatcttcacattaagcacatataatccaagtggacttgctacacttccaaaattatacaaagttgcataatatttaagt |
100 |
Q |
| |
|
||||||||| ||||||||||||| | | |||||||| | ||||||||||| |||||| ||||| | ||||| || |||||||| ||||||||| | |
|
|
| T |
50408019 |
tttgtcatataaatgaccagcgaccctaacattaagaaaatataatccaattggactagctaccccaccaaagttcatcaaagttgaataatatttcaac |
50407920 |
T |
|
| Q |
101 |
ccaaaaagttctgatataatggcaaaaagtaatggccattgagcaccaaaacaaaatccaataatcactgaagc |
174 |
Q |
| |
|
||||| | || || || |||||||||| ||||||||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
50407919 |
ccaaacaactccgaaattatggcaaaaaccaatggccattgtgcaccaaaacaaaatccaatgattactgaagc |
50407846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 230
Target Start/End: Original strand, 19712643 - 19712805
Alignment:
| Q |
68 |
ccaaaattatacaaagttgcataatatttaagtccaaaaagttctgatataatggcaaaaagtaatggccattgagcaccaaaacaaaatccaataatca |
167 |
Q |
| |
|
|||| ||| ||||| |||| ||||||||||| ||||| ||||| ||||| || | ||| |||| |||||| | |||||||| || || |||||||| | |
|
|
| T |
19712643 |
ccaacattgtacaatgttgagtaatatttaagaccaaagagttcagatatgattgaaaatagtactggccaatttgcaccaaagcagaaaccaataataa |
19712742 |
T |
|
| Q |
168 |
ctgaagctacataaagaccctctggcacatcaaatgctatcaaaaggtgtcccacacaagaga |
230 |
Q |
| |
|
||| |||||||||||||| | ||| |||| |||||| || | |||||| || | |||||||| |
|
|
| T |
19712743 |
ttgatgctacataaagaccatttgggacattaaatgcaattagaaggtgacctaaacaagaga |
19712805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 168
Target Start/End: Complemental strand, 41335065 - 41334950
Alignment:
| Q |
53 |
ggacttgctacacttccaaaattatacaaagttgcataatatttaagtccaaaaagttctgatataatggcaaaaagtaatggccattgagcaccaaaac |
152 |
Q |
| |
|
|||||||| ||| ||||||||| |||||||||| ||| ||||| | |||||||| ||| ||||| || ||||| | |||||||||||||| ||||||| |
|
|
| T |
41335065 |
ggacttgccacagctccaaaattgtacaaagttgaatagtatttcaatccaaaaatttcggatatgattgcaaacatcaatggccattgagctccaaaac |
41334966 |
T |
|
| Q |
153 |
aaaatccaataatcac |
168 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
41334965 |
aaaaaccaataatcac |
41334950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 3730 - 3641
Alignment:
| Q |
1 |
tttgtcatacaaatgaccagcgatcttcacattaagcacatataatccaagtggacttgctacacttccaaaattatacaaagttgcata |
90 |
Q |
| |
|
||||| |||| |||||| | |||||||||| | || ||| |||| ||||| || ||||||||||||||||| | |||||||||||||| |
|
|
| T |
3730 |
tttgtgataccaatgactggtgatcttcacaatcagaacagataacacaagttgagttgctacacttccaaaactgtacaaagttgcata |
3641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University