View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7648_low_21 (Length: 240)
Name: NF7648_low_21
Description: NF7648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7648_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 11050490 - 11050385
Alignment:
| Q |
1 |
cttaccactataatttaaatgcatatgtttcttctctattccaacataatttttccacacaaacaaaactatacagcataaacctttctcctaaaccgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11050490 |
cttaccactataatttaaatgcatatgtttcttctctattccaacataatttttccacacaaacaaaaatatacagcataaacctttctcctaaaccgaa |
11050391 |
T |
|
| Q |
101 |
tgaagc |
106 |
Q |
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|||||| |
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| T |
11050390 |
tgaagc |
11050385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 10218682 - 10218579
Alignment:
| Q |
1 |
cttaccactataatttaaatgcatatgtttcttctctattccaacataatttttccacacaaacaaaactatacagcataaacctttctcctaaaccgaa |
100 |
Q |
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|||||||||| ||||| || ||||||| ||||||||| ||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
10218682 |
cttaccactagaatttgaacgcatatgcttcttctctgttcca-cataatttttccacacaaacaaaa-tatatagcataaacctttctcctaaaccgaa |
10218585 |
T |
|
| Q |
101 |
tgaagc |
106 |
Q |
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|||||| |
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| T |
10218584 |
tgaagc |
10218579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 11050329 - 11050267
Alignment:
| Q |
162 |
cccaaacagaattgtggcacaagcattaggaaaccaaacagatcattttgcattgattaaatt |
224 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11050329 |
cccaaacagagttgttgcacaagcattaggaaaccaaacagatcattttgcattgattaaatt |
11050267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 10562801 - 10562833
Alignment:
| Q |
184 |
gcattaggaaaccaaacagatcattttgcattg |
216 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
10562801 |
gcattaggaaaccaaacagatcatttagcattg |
10562833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 10749450 - 10749418
Alignment:
| Q |
184 |
gcattaggaaaccaaacagatcattttgcattg |
216 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
10749450 |
gcattaggaaaccaaacagatcatttggcattg |
10749418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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