View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7648_low_24 (Length: 230)

Name: NF7648_low_24
Description: NF7648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7648_low_24
NF7648_low_24
[»] chr8 (5 HSPs)
chr8 (1-229)||(7031322-7031550)
chr8 (1-229)||(7037031-7037259)
chr8 (6-225)||(7074707-7074926)
chr8 (1-229)||(7023933-7024161)
chr8 (15-121)||(7068305-7068411)
[»] chr4 (11 HSPs)
chr4 (27-122)||(3816895-3816990)
chr4 (29-122)||(4024531-4024624)
chr4 (27-122)||(3933698-3933793)
chr4 (27-122)||(3920474-3920569)
chr4 (27-122)||(4001605-4001700)
chr4 (15-122)||(4009295-4009402)
chr4 (27-198)||(3809236-3809407)
chr4 (27-122)||(3986294-3986389)
chr4 (27-121)||(3956218-3956312)
chr4 (27-121)||(4018017-4018111)
chr4 (15-120)||(3800889-3800992)
[»] chr5 (1 HSPs)
chr5 (27-122)||(13397246-13397341)
[»] chr2 (1 HSPs)
chr2 (63-136)||(42858140-42858213)


Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 7031322 - 7031550
Alignment:
Q  1 cggtgagcactaaattagacaggctaaaagataaagctcttgtaactatttctcaagaaaatattgtatcaatgcatgacattatacaagaaacggcttg 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| |||||    
T  7031322 cggtaagcactaaattagacaggctaaaagataaagctcttgtaactatttctcaacaaagtatagtatcaatgcatgacattatacaagaaacagcttg 7031421  T
Q  101 ggagattgttcgtcaagaatctgtggaagaacctggaagccgaagccgactatcggatcctgatgatatttatcatatattgaatgatgacaaggtaatt 200  Q
    ||| |||||||| ||||||||||| |||||||||||||||||||||||||||| | |||| ||||||||||||||| | ||||| ||||||||||||| |    
T  7031422 ggaaattgttcgccaagaatctgttgaagaacctggaagccgaagccgactattgaatcccgatgatatttatcatgtgttgaaagatgacaaggtaaat 7031521  T
Q  201 atttttcatagaagatttgattatttttg 229  Q
    |||||||||||||||||||||||||||||    
T  7031522 atttttcatagaagatttgattatttttg 7031550  T

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Target: chr8; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 7037031 - 7037259
Alignment:
Q  1 cggtgagcactaaattagacaggctaaaagataaagctcttgtaactatttctcaagaaaatattgtatcaatgcatgacattatacaagaaacggcttg 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||    
T  7037031 cggttagcactaaattagacaggctaaaagataaagctcttgtaactatttctcaataaattattgtatcaatgcatgacattatacaagaaactgcttg 7037130  T
Q  101 ggagattgttcgtcaagaatctgtggaagaacctggaagccgaagccgactatcggatcctgatgatatttatcatatattgaatgatgacaaggtaatt 200  Q
    ||| |||||||  ||||||||||| |||||||||||||||||||||||||||| | |||| ||||||||||||||| | ||||| ||||||||||||| |    
T  7037131 ggatattgttctccaagaatctgttgaagaacctggaagccgaagccgactattgaatcccgatgatatttatcatgtgttgaaagatgacaaggtaaat 7037230  T
Q  201 atttttcatagaagatttgattatttttg 229  Q
    |||||||||||||||||||||||||||||    
T  7037231 atttttcatagaagatttgattatttttg 7037259  T

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Target: chr8; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 7074926 - 7074707
Alignment:
Q  6 agcactaaattagacaggctaaaagataaagctcttgtaactatttctcaagaaaatattgtatcaatgcatgacattatacaagaaacggcttgggaga 105  Q
    ||||||| ||| || |||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||| ||| ||||||    
T  7074926 agcactagattggaaaggctaaaagataaagctcttgtaactatttctcaacaaagcattgtatcaatgcatgacattatacaagaaacagctagggaga 7074827  T
Q  106 ttgttcgtcaagaatctgtggaagaacctggaagccgaagccgactatcggatcctgatgatatttatcatatattgaatgatgacaaggtaattatttt 205  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||| ||||||| ||||||||||||| || |||    
T  7074826 ttgttcgccaagaatctgttgaagaacctggaaaccgaagccgactattggatcctgatgacatttatcatgtattgaaagatgacaaggtaaatacttt 7074727  T
Q  206 tcatagaagatttgattatt 225  Q
    |  || |||| |||||||||    
T  7074726 ttgtacaagacttgattatt 7074707  T

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Target: chr8; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 7023933 - 7024161
Alignment:
Q  1 cggtgagcactaaattagacaggctaaaagataaagctcttgtaactatttctcaagaaaatattgtatcaatgcatgacattatacaagaaacggcttg 100  Q
    ||||||||| ||||||||||| ||||||| |  ||| ||||||||||||||||||| ||| ||||||||||||| ||||||| | ||||||||| |||||    
T  7023933 cggtgagcaataaattagacaagctaaaaaacgaaggtcttgtaactatttctcaacaaagtattgtatcaatggatgacataacacaagaaactgcttg 7024032  T
Q  101 ggagattgttcgtcaagaatctgtggaagaacctggaagccgaagccgactatcggatcctgatgatatttatcatatattgaatgatgacaaggtaatt 200  Q
    ||||||||||||  | |||||| | |||||||||||||  |||||||| || ||||||||| |||| |||||| || |||| || |||||||||||||||    
T  7024033 ggagattgttcgcaatgaatcttttgaagaacctggaaatcgaagccggctctcggatcctaatgacatttataatgtattaaaagatgacaaggtaatt 7024132  T
Q  201 atttttcatagaagatttgattatttttg 229  Q
    ||||||||| ||||||||| |||| ||||    
T  7024133 atttttcattgaagatttgcttatatttg 7024161  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 7068411 - 7068305
Alignment:
Q  15 ttagacaggctaaaagataaagctcttgtaactatttctcaagaaaatattgtatcaatgcatgacattatacaagaaacggcttgggagattgttcgtc 114  Q
    ||||| || |||||| ||||||| ||| ||| |||||||| ||| ||| ||||||| |||||   ||||||||||||||| ||||||||  |||||||      
T  7068411 ttagaaagtctaaaaaataaagcacttataaatatttctccagataatgttgtatccatgcacaccattatacaagaaacagcttgggaatttgttcgcg 7068312  T
Q  115 aagaatc 121  Q
    |||||||    
T  7068311 aagaatc 7068305  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 3816990 - 3816895
Alignment:
Q  27 aaagataaagctcttgtaactatttctcaagaaaatattgtatcaatgcatgacattatacaagaaacggcttgggagattgttcgtcaagaatct 122  Q
    ||||||||||||||| ||||||||||| |||| ||| || |||| |||||||||||| | ||||||| || ||||||||||||||| |||||||||    
T  3816990 aaagataaagctcttataactatttctgaagataatgttatatctatgcatgacattcttcaagaaatgggttgggagattgttcggcaagaatct 3816895  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 4024624 - 4024531
Alignment:
Q  29 agataaagctcttgtaactatttctcaagaaaatattgtatcaatgcatgacattatacaagaaacggcttgggagattgttcgtcaagaatct 122  Q
    ||||||||||||| ||||||||||| |||| |||||| |||| |||||||||||| ||||||||| || | ||||| ||||||| |||||||||    
T  4024624 agataaagctcttataactatttctgaagataatattatatctatgcatgacattctacaagaaatgggtcgggaggttgttcgccaagaatct 4024531  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 3933698 - 3933793
Alignment:
Q  27 aaagataaagctcttgtaactatttctcaagaaaatattgtatcaatgcatgacattatacaagaaacggcttgggagattgttcgtcaagaatct 122  Q
    ||||||||||||||| ||||||||||| |||| ||| || |||| |||||||||||| | ||||||| || ||||||| ||||||| |||||||||    
T  3933698 aaagataaagctcttataactatttctgaagataatgttatatctatgcatgacattcttcaagaaatgggttgggaggttgttcggcaagaatct 3933793  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 3920474 - 3920569
Alignment:
Q  27 aaagataaagctcttgtaactatttctcaagaaaatattgtatcaatgcatgacattatacaagaaacggcttgggagattgttcgtcaagaatct 122  Q
    ||||||||||||||| ||||||||||| |||| ||| || |||| |||||||||||| ||||||||| || | ||||| | ||||| |||||||||    
T  3920474 aaagataaagctcttataactatttctgaagataatgttatatctatgcatgacattctacaagaaatgggtcgggaggtagttcgccaagaatct 3920569  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 4001700 - 4001605
Alignment:
Q  27 aaagataaagctcttgtaactatttctcaagaaaatattgtatcaatgcatgacattatacaagaaacggcttgggagattgttcgtcaagaatct 122  Q
    ||||||||||||||| ||||||||||  || | ||| ||||||| |||||||||||| ||||||||| || | ||||| ||||||| |||||||||    
T  4001700 aaagataaagctcttataactatttcgaaatataatgttgtatctatgcatgacattttacaagaaatgggtcgggaggttgttcgccaagaatct 4001605  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 4009402 - 4009295
Alignment:
Q  15 ttagacaggctaaaagataaagctcttgtaactatttctcaagaaaatattgtatcaatgcatgacattatacaagaaacggcttgggagattgttcgtc 114  Q
    ||||| ||| ||||||||||||||||| |||| |||||| |||| ||| |  |||| |||||||||||| ||||||||| || | ||||| ||||||||     
T  4009402 ttagaaaggttaaaagataaagctcttataacaatttctgaagataatgtaatatctatgcatgacattctacaagaaatgggtcgggaggttgttcgtt 4009303  T
Q  115 aagaatct 122  Q
    ||||||||    
T  4009302 aagaatct 4009295  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 198
Target Start/End: Complemental strand, 3809407 - 3809236
Alignment:
Q  27 aaagataaagctcttgtaactatttctcaagaaaatattgtatcaatgcatgacattatacaagaaacggcttgggagattgttcgtcaagaatctgtgg 126  Q
    ||||| ||||||||| ||||||||||| || | ||| || |||| |||||||||||| ||||||||| || | ||||| | ||||| |||||||||   |    
T  3809407 aaagacaaagctcttataactatttctgaatataatgttatatctatgcatgacattctacaagaaatgggtcgggaggtagttcgccaagaatctagag 3809308  T
Q  127 aagaacctggaagccgaagccgactatcggatcctgatgatatttatcatatattgaatgatgacaaggtaa 198  Q
    || | |||| ||  || || ||| ||| | |||||||||| |||||| || |||||||  ||||||||||||    
T  3809307 aacaccctgaaaaacgcagtcgattatggaatcctgatgaaatttatgatgtattgaaaaatgacaaggtaa 3809236  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 3986389 - 3986294
Alignment:
Q  27 aaagataaagctcttgtaactatttctcaagaaaatattgtatcaatgcatgacattatacaagaaacggcttgggagattgttcgtcaagaatct 122  Q
    ||||||||||||||  ||||||||||| |||| ||| || |||| |||||||||||| | ||||||| || | ||||| ||||||| |||||||||    
T  3986389 aaagataaagctctcataactatttctgaagataatgttatatctatgcatgacattcttcaagaaatgggtcgggaggttgttcgccaagaatct 3986294  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 3956218 - 3956312
Alignment:
Q  27 aaagataaagctcttgtaactatttctcaagaaaatattgtatcaatgcatgacattatacaagaaacggcttgggagattgttcgtcaagaatc 121  Q
    ||||||||| ||||| |||| |||||| |||| ||| || |||| |||||||||||| ||||||||| || | ||||| ||||||| ||||||||    
T  3956218 aaagataaatctcttataacaatttctgaagataatgttatatccatgcatgacattctacaagaaatgggtcgggaggttgttcgccaagaatc 3956312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 4018111 - 4018017
Alignment:
Q  27 aaagataaagctcttgtaactatttctcaagaaaatattgtatcaatgcatgacattatacaagaaacggcttgggagattgttcgtcaagaatc 121  Q
    |||||||||| |||| || || ||||| |||| ||| || |||| |||||||||||||||||||||| || | |||| |||||||| ||||||||    
T  4018111 aaagataaaggtcttatatctttttctaaagataatgttatatccatgcatgacattatacaagaaatgggtagggaaattgttcgccaagaatc 4018017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 3800992 - 3800889
Alignment:
Q  15 ttagacaggctaaaagataaagctcttgtaactatttctcaagaaaatattgtatcaatgcatgacattatacaagaaacggcttgggagattgttcgtc 114  Q
    ||||| ||| ||||||||||||||||| ||||||||||||  || ||| || |||| |||||||||||| ||  ||||| || | ||||| ||||||| |    
T  3800992 ttagaaaggttaaaagataaagctcttataactatttctc--gataatgttatatctatgcatgacattctatgagaaatgggtcgggaggttgttcgcc 3800895  T
Q  115 aagaat 120  Q
    ||||||    
T  3800894 aagaat 3800889  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 13397341 - 13397246
Alignment:
Q  27 aaagataaagctcttgtaactatttctcaagaaaatattgtatcaatgcatgacattatacaagaaacggcttgggagattgttcgtcaagaatct 122  Q
    ||||||||||||||| ||||||||||| |||| ||| || |||| |||||||||||| |||| |||| || | | ||| ||||||| |||||||||    
T  13397341 aaagataaagctcttataactatttctaaagataatgttatatctatgcatgacattctacaggaaatgggtcgcgaggttgttcgccaagaatct 13397246  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 42858213 - 42858140
Alignment:
Q  63 attgtatcaatgcatgacattatacaagaaacggcttgggagattgttcgtcaagaatctgtggaagaacctgg 136  Q
    |||||||| ||||||||  | |||||||||| || |||||||||||||||  |||||| ||| ||||| |||||    
T  42858213 attgtatccatgcatgatttgatacaagaaatgggttgggagattgttcgagaagaatgtgttgaagaccctgg 42858140  T

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