View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7648_low_25 (Length: 229)
Name: NF7648_low_25
Description: NF7648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7648_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 56 - 218
Target Start/End: Complemental strand, 17560000 - 17559831
Alignment:
| Q |
56 |
ttactaatgtgttaggattcaacaaaagttcttgctctttgttattaaagatatgcaacccctaaaagttttgaaagtctgcatctcttttataactatc |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
17560000 |
ttactaatgtgttaggattcaacaaaagttcttgctctttgttattaaagatatgcaacccctaaaagttttgaaagtgtgcatctcttttatatctatc |
17559901 |
T |
|
| Q |
156 |
ctgattcaacaaaaaattg-------aaaaagttatatagcctgttccattagcatgctcagcacaggtt |
218 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17559900 |
ctgattcaacaaaaaattgaaaattgaaaaagtcatatagcctgttccattagcatgctcagcgcaggtt |
17559831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 181
Target Start/End: Original strand, 36893011 - 36893103
Alignment:
| Q |
89 |
gctctttgttattaaagatatgcaacccctaaaagttttgaaagtctgcatctcttttataactatcctgattcaacaaaaaattgaaaaagt |
181 |
Q |
| |
|
|||||||| | ||||||||||| | |||||||||||||||||||| ||||| | ||||||| || |||| ||||| |||||||||||| |||| |
|
|
| T |
36893011 |
gctctttgcttttaaagatatgaatcccctaaaagttttgaaagtgtgcatgtgttttatatctgtcctaattcaccaaaaaattgaagaagt |
36893103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 50227799 - 50227635
Alignment:
| Q |
18 |
agttaacactggaagcttaagtagaggaatgtagtgcattactaatgtgttaggattcaacaaaagt--tcttgctctttgttatt-aaagatatgcaac |
114 |
Q |
| |
|
||||||||||||||||| ||| | |||||||||| |||| |||||||||||||||||| | | | | ||||||| ||| || ||||||||||| | |
|
|
| T |
50227799 |
agttaacactggaagctcaaggaaaggaatgtag--cattgctaatgtgttaggattcattcatattcatattgctctccgttttttaaagatatgcatc |
50227702 |
T |
|
| Q |
115 |
ccctaaaagttttgaaagtctgcatctcttttataactatcctgattcaacaaaaaattgaaaaagt |
181 |
Q |
| |
|
|| ||||||||||||||| ||||||| |||||| ||||||| ||||| | ||||| ||||||||| |
|
|
| T |
50227701 |
tccaaaaagttttgaaagtgtgcatctgatttatatctatcctaattcacccaaaaaatgaaaaagt |
50227635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 181
Target Start/End: Complemental strand, 40980107 - 40979968
Alignment:
| Q |
44 |
gaatgtagtgcattactaatgtgttaggattcaacaaaagt--tcttgctctttgttattaaagatatgcaacccctaaaagttttgaaagtctgcatct |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | | | | |||||||||| | ||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
40980107 |
gaatgtagtgcattactaatgtgttaggattcattcatattcatattgctctttgcttttaaagatatgcatcccctaaaagttttgaaagtgtgcatct |
40980008 |
T |
|
| Q |
142 |
cttttataactatcctgattcaacaaaaaattgaaaaagt |
181 |
Q |
| |
|
||||||| || |||| ||||| |||||||||||| |||| |
|
|
| T |
40980007 |
gttttatatctgtcctaattcaccaaaaaattgaagaagt |
40979968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 24967846 - 24967779
Alignment:
| Q |
114 |
cccctaaaagttttgaaagtctgcatctcttttataactatcctgattcaacaaaaaattgaaaaagt |
181 |
Q |
| |
|
|||||||||||||| ||||| ||||| | ||||||| ||||||| ||||| ||| ||||||||||||| |
|
|
| T |
24967846 |
cccctaaaagttttaaaagtgtgcatttattttatatctatcctaattcaccaacaaattgaaaaagt |
24967779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 44 - 181
Target Start/End: Original strand, 26451309 - 26451448
Alignment:
| Q |
44 |
gaatgtagtgcattactaatgtgttaggattcaacaaaagt--tcttgctctttgttattaaagatatgcaacccctaaaagttttgaaagtctgcatct |
141 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | | | | |||||||||| | ||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
26451309 |
gaatgtagtgcatttctaatgtgttaggattcattcatactcatattgctctttgcttttaaagatatgcatcccctaaaagttttgaaagtgtgcatct |
26451408 |
T |
|
| Q |
142 |
cttttataactatcctgattcaacaaaaaattgaaaaagt |
181 |
Q |
| |
|
||||||| || |||| ||||| |||||||||||| |||| |
|
|
| T |
26451409 |
gttttatatctgtcctaattcaccaaaaaattgaagaagt |
26451448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 19535364 - 19535304
Alignment:
| Q |
121 |
aagttttgaaagtctgcatctcttttataactatcctgattcaacaaaaaattgaaaaagt |
181 |
Q |
| |
|
||||||||||||||||||| | ||||||| ||||| | ||| | ||| ||||||||||||| |
|
|
| T |
19535364 |
aagttttgaaagtctgcatttattttatatctatcgtaattgaccaacaaattgaaaaagt |
19535304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University