View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7648_low_28 (Length: 208)

Name: NF7648_low_28
Description: NF7648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7648_low_28
NF7648_low_28
[»] chr7 (2 HSPs)
chr7 (20-192)||(3480430-3480602)
chr7 (138-182)||(34866244-34866287)
[»] chr8 (5 HSPs)
chr8 (119-183)||(511954-512017)
chr8 (138-182)||(40953547-40953590)
chr8 (125-182)||(11656136-11656192)
chr8 (125-182)||(16295654-16295710)
chr8 (125-182)||(16303356-16303412)
[»] chr5 (4 HSPs)
chr5 (81-182)||(41841632-41841731)
chr5 (138-182)||(25346853-25346896)
chr5 (138-182)||(29861185-29861228)
chr5 (118-182)||(39351587-39351650)
[»] chr6 (5 HSPs)
chr6 (69-182)||(32329657-32329769)
chr6 (138-182)||(12255430-12255473)
chr6 (125-182)||(9315125-9315181)
chr6 (125-182)||(23404804-23404860)
chr6 (138-182)||(391086-391129)
[»] chr1 (2 HSPs)
chr1 (108-180)||(10306579-10306650)
chr1 (125-182)||(37346146-37346202)
[»] chr4 (5 HSPs)
chr4 (138-181)||(34940610-34940652)
chr4 (124-182)||(36198603-36198660)
chr4 (125-182)||(45498962-45499018)
chr4 (138-182)||(37910465-37910508)
chr4 (138-182)||(44289428-44289471)
[»] chr2 (3 HSPs)
chr2 (139-182)||(27339029-27339071)
chr2 (138-182)||(13995540-13995583)
chr2 (138-182)||(37485891-37485934)
[»] chr3 (1 HSPs)
chr3 (125-182)||(41864778-41864834)


Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 3480430 - 3480602
Alignment:
Q  20 atggactttatggcattaactctaactctaaacgacgctgagtgctcggttgatagtcataataggatagagacgagataagatattgaattgggtatag 119  Q
    ||||| ||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  3480430 atggattttatggtattagctctaaccctaaacgacgctgagtgctcggttgatagtcataataggatagagacgagataaaatattgaattgagtatag 3480529  T
Q  120 acaaaatatgatatgaaaatgataaacattactcattatcatgtgtttgatgcgcacatgatactattattat 192  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3480530 ataaaatatgatatgaaaatgataaacattactcattatcatgtgtttgatgcgcacatgatactattattat 3480602  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 34866244 - 34866287
Alignment:
Q  138 atgataaacattactcattatcatgtgtttgatgcgcacatgata 182  Q
    ||||||||||||| || ||||||||||||||||||||||||||||    
T  34866244 atgataaacattaatc-ttatcatgtgtttgatgcgcacatgata 34866287  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 512017 - 511954
Alignment:
Q  119 gacaaaatatgatatgaaaatgataaacattactcattatcatgtgtttgatgcgcacatgatac 183  Q
    |||||||||||||||  | ||||||||||||| || |||||||||||||||| ||||||||||||    
T  512017 gacaaaatatgatatagatatgataaacattaatc-ttatcatgtgtttgattcgcacatgatac 511954  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 40953590 - 40953547
Alignment:
Q  138 atgataaacattactcattatcatgtgtttgatgcgcacatgata 182  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||    
T  40953590 atgataaacattaatcat-atcatgtgtttgatgcgcacatgata 40953547  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 11656136 - 11656192
Alignment:
Q  125 atatgatatgaaaatgataaacattactcattatcatgtgtttgatgcgcacatgata 182  Q
    |||||||| | | ||||||||||||| |||| ||||||||||||||||| ||||||||    
T  11656136 atatgataaggacatgataaacattaatcat-atcatgtgtttgatgcgtacatgata 11656192  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 16295710 - 16295654
Alignment:
Q  125 atatgatatgaaaatgataaacattactcattatcatgtgtttgatgcgcacatgata 182  Q
    |||||||| | | ||||||||||||| || ||||||||||||||||| ||||||||||    
T  16295710 atatgataaggacatgataaacattaatc-ttatcatgtgtttgatgtgcacatgata 16295654  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 16303412 - 16303356
Alignment:
Q  125 atatgatatgaaaatgataaacattactcattatcatgtgtttgatgcgcacatgata 182  Q
    |||||||| | | ||||||||||||| || ||||||||||||||||| ||||||||||    
T  16303412 atatgataaggacatgataaacattaatc-ttatcatgtgtttgatgtgcacatgata 16303356  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 41841632 - 41841731
Alignment:
Q  81 ataggatagagacgagataagatattgaattgggtatagacaaaatatgatatgaaaatgataaacattactcattatcatgtgtttgatgcgcacatga 180  Q
    |||||||||||||| |||| |||||| || ||| || ||| ||||||||||||||| |||||||   |||  |  ||||| |||||||||||||||||||    
T  41841632 ataggatagagacgtgatatgatattaaactggataaagataaaatatgatatgaacatgataacacttatcc--tatcacgtgtttgatgcgcacatga 41841729  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 25346853 - 25346896
Alignment:
Q  138 atgataaacattactcattatcatgtgtttgatgcgcacatgata 182  Q
    ||||||||||||| || | ||||||||||||||||||||||||||    
T  25346853 atgataaacattaatcct-atcatgtgtttgatgcgcacatgata 25346896  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 29861228 - 29861185
Alignment:
Q  138 atgataaacattactcattatcatgtgtttgatgcgcacatgata 182  Q
    ||||||||||||| || ||||||||||||||||| ||||||||||    
T  29861228 atgataaacattaatc-ttatcatgtgtttgatgtgcacatgata 29861185  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 39351650 - 39351587
Alignment:
Q  118 agacaaaatatgatatgaaaatgataaacattactcattatcatgtgtttgatgcgcacatgata 182  Q
    ||||| ||||| ||||| | ||||||  ||||| |||| ||||||||||||||||||||||||||    
T  39351650 agacataatataatatggacatgatatgcattaatcat-atcatgtgtttgatgcgcacatgata 39351587  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 182
Target Start/End: Complemental strand, 32329769 - 32329657
Alignment:
Q  69 ttgatagtcataataggatagagacgagataagatattgaattgggtatagacaaaatatgatatgaaaatgataaacattactcattatcatgtgtttg 168  Q
    ||||| ||||| ||| ||||||| || |||| |||||  || ||| || ||| || |||||||| | | ||||||||||||| |||| ||||||||||||    
T  32329769 ttgatggtcatgataagatagaggcgggatatgatataaaactggatagagataagatatgataaggacatgataaacattaatcat-atcatgtgtttg 32329671  T
Q  169 atgcgcacatgata 182  Q
    || |||||||||||    
T  32329670 atacgcacatgata 32329657  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 12255473 - 12255430
Alignment:
Q  138 atgataaacattactcattatcatgtgtttgatgcgcacatgata 182  Q
    ||||||||||||| || ||||||||||||||||||||||||||||    
T  12255473 atgataaacattaatc-ttatcatgtgtttgatgcgcacatgata 12255430  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 9315181 - 9315125
Alignment:
Q  125 atatgatatgaaaatgataaacattactcattatcatgtgtttgatgcgcacatgata 182  Q
    |||||||| | | ||||||||||||| || | ||||||||||||||||||||||||||    
T  9315181 atatgataaggacatgataaacattaatcct-atcatgtgtttgatgcgcacatgata 9315125  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 23404860 - 23404804
Alignment:
Q  125 atatgatatgaaaatgataaacattactcattatcatgtgtttgatgcgcacatgata 182  Q
    |||||||| | | ||||||||||||| | |||||||||||||||||| ||||||||||    
T  23404860 atatgataaggacatgataaacattaat-attatcatgtgtttgatgtgcacatgata 23404804  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 391086 - 391129
Alignment:
Q  138 atgataaacattactcattatcatgtgtttgatgcgcacatgata 182  Q
    ||||||||||||| || ||||||||||||||||| ||||||||||    
T  391086 atgataaacattaatc-ttatcatgtgtttgatgtgcacatgata 391129  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 10306579 - 10306650
Alignment:
Q  108 aattgggtatagacaaaatatgatatgaaaatgataaacattactcattatcatgtgtttgatgcgcacatga 180  Q
    |||||| || |||||| |||||||||| | ||||||||||||| ||| ||||| |||||||||| ||||||||    
T  10306579 aattggataaagacaagatatgatatgtacatgataaacattaatca-tatcacgtgtttgatgtgcacatga 10306650  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 37346146 - 37346202
Alignment:
Q  125 atatgatatgaaaatgataaacattactcattatcatgtgtttgatgcgcacatgata 182  Q
    |||||||| | | ||||||||||||| || | ||||||||||||||||||||||||||    
T  37346146 atatgataaggacatgataaacattaatcct-atcatgtgtttgatgcgcacatgata 37346202  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 34940652 - 34940610
Alignment:
Q  138 atgataaacattactcattatcatgtgtttgatgcgcacatgat 181  Q
    ||||||||||||| |||| |||||||||||||||||||||||||    
T  34940652 atgataaacattaatcat-atcatgtgtttgatgcgcacatgat 34940610  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 36198603 - 36198660
Alignment:
Q  124 aatatgatatgaaaatgataaacattactcattatcatgtgtttgatgcgcacatgata 182  Q
    ||||||||| | | ||||||||||||| || ||||||||||||||||| ||||||||||    
T  36198603 aatatgataagtacatgataaacattaatc-ttatcatgtgtttgatgtgcacatgata 36198660  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 45498962 - 45499018
Alignment:
Q  125 atatgatatgaaaatgataaacattactcattatcatgtgtttgatgcgcacatgata 182  Q
    |||||||| | | ||||||||||||| |||| |||||||||||||||| |||||||||    
T  45498962 atatgataaggacatgataaacattaatcat-atcatgtgtttgatgcacacatgata 45499018  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 37910465 - 37910508
Alignment:
Q  138 atgataaacattactcattatcatgtgtttgatgcgcacatgata 182  Q
    ||||||||||||| |||| |||||||||||||||| |||||||||    
T  37910465 atgataaacattaatcat-atcatgtgtttgatgcacacatgata 37910508  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 44289428 - 44289471
Alignment:
Q  138 atgataaacattactcattatcatgtgtttgatgcgcacatgata 182  Q
    ||||||||||||| || || |||||||||||||||||||||||||    
T  44289428 atgataaacattaatc-ttctcatgtgtttgatgcgcacatgata 44289471  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 27339071 - 27339029
Alignment:
Q  139 tgataaacattactcattatcatgtgtttgatgcgcacatgata 182  Q
    |||||||||||| |||| ||||||||||||||||||||||||||    
T  27339071 tgataaacattaatcat-atcatgtgtttgatgcgcacatgata 27339029  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 13995540 - 13995583
Alignment:
Q  138 atgataaacattactcattatcatgtgtttgatgcgcacatgata 182  Q
    ||||||||||||| || | ||||||||||||||||||||||||||    
T  13995540 atgataaacattaatcct-atcatgtgtttgatgcgcacatgata 13995583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 37485934 - 37485891
Alignment:
Q  138 atgataaacattactcattatcatgtgtttgatgcgcacatgata 182  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||||    
T  37485934 atgataaacattaatcat-atcatgtgtttgatgtgcacatgata 37485891  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 41864778 - 41864834
Alignment:
Q  125 atatgatatgaaaatgataaacattactcattatcatgtgtttgatgcgcacatgata 182  Q
    |||||||||| | ||||||||||||| || ||||||||| |||||||| |||||||||    
T  41864778 atatgatatgtatatgataaacattaatc-ttatcatgtatttgatgcacacatgata 41864834  T

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