View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7648_low_3 (Length: 632)
Name: NF7648_low_3
Description: NF7648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7648_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 16 - 614
Target Start/End: Original strand, 35157497 - 35158095
Alignment:
| Q |
16 |
tgtgtttaatgataagagtgtagttgactcttttccattaaagatgtggatatgcgtctcggatgattttgatgttaagaatctgcttgttaagattatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35157497 |
tgtgtttaatgataagagtgtagttgactcttttccattaaagatgtggatatgcgtctcggatgattttgatgttaagaatctgcttgttaagattatt |
35157596 |
T |
|
| Q |
116 |
ggatctgctcctgaccaaaatcaccaggagaacattaaaaactttagtttggagcaactgaaaaatcgtcttagagacatacttgctggtcaaaagttct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35157597 |
ggatctgctcctgaccaaaatcaccaggagaacattaaaaactttagtttggagcaactgaaaaatcgtcttagagacatacttgctggtcaaaagttct |
35157696 |
T |
|
| Q |
216 |
tacttgttttggacgatgtgtggaatgagaatcgtgtcaaatgggaagaatttaggggtttaataccagcaggtgctcaaggaagtaaagtactagtgac |
315 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35157697 |
tacttgttttggacgatgtgtggaatgaggatcgtgtcaaatgggaagaatttaggggtttaataccagcaggtgctcaaggaagtaaagtactagtgac |
35157796 |
T |
|
| Q |
316 |
ttcacgtagcgacacggtagctaacatgatgggcacttacacttcttacaatttgcaagggctttctaaagaggactcattgtctgtatttgtaaaatgg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35157797 |
ttcacgtagcgacacggtagctaacatgatgggcacttacacttcttacaatttgcaagggctttctaaagaggactcattgtctgtatttgtaaaatgg |
35157896 |
T |
|
| Q |
416 |
gcttttaaagagggagaaaagagtaaacatcctgaactaatggagattgaaaaagatattgtgcttaaatgtggagggcttccattggccctaaggacat |
515 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35157897 |
gcttttaaagagggagaagagagtaaacatcctgaactaatggagattggaaaagatattgtgcttaaatgtggagggcttccattggccctaaggacat |
35157996 |
T |
|
| Q |
516 |
tggggagttcactgttcttaaaagttgatatacaagagtggaagtttgttagggacaatgagatttggaatttaccgcaaaaagatgaggacattttac |
614 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35157997 |
tggggagttcgctgttcttaaaagttgatatacaagagtggaagtttgttagggacaatgagatttggaatttaccgcaaaaagacgaggacattttac |
35158095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 5e-70; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 294 - 600
Target Start/End: Complemental strand, 29602637 - 29602331
Alignment:
| Q |
294 |
aaggaagtaaagtactagtgacttcacgtagcgacacggtagctaacatgatgggcacttacacttcttacaatttgcaagggctttctaaagaggactc |
393 |
Q |
| |
|
||||||||||||| |||||||| ||||||| || | | ||||| |||||| |||| |||| ||||||| ||||||||| ||||||| |||||| || |
|
|
| T |
29602637 |
aaggaagtaaagttttagtgactacacgtagtcactcaattgctaaaatgatgtgcacaaacacatcttacactttgcaaggtctttctagagaggattc |
29602538 |
T |
|
| Q |
394 |
attgtctgtatttgtaaaatgggcttttaaagagggagaaaagagtaaacatcctgaactaatggagattgaaaaagatattgtgcttaaatgtggaggg |
493 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||| ||| ||| |||| || | || ||||||| ||||| ||||| | |||||||||||| |
|
|
| T |
29602537 |
cttgtctgtatttgtcaaatgggcatttaaagagggagaagagaaaaaatatccaaaattgatagagattgggaaagaaattgttcaaaaatgtggaggg |
29602438 |
T |
|
| Q |
494 |
cttccattggccctaaggacattggggagttcactgttcttaaaagttgatatacaagagtggaagtttgttagggacaatgagatttggaatttaccgc |
593 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| | |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29602437 |
cttcctttggccctaagaacattggggagtttattgttcttaaaagatgatatagaagagtggaagtttgttagggacaatgagatttggaatttaccac |
29602338 |
T |
|
| Q |
594 |
aaaaaga |
600 |
Q |
| |
|
||||||| |
|
|
| T |
29602337 |
aaaaaga |
29602331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 294 - 600
Target Start/End: Original strand, 29750657 - 29750963
Alignment:
| Q |
294 |
aaggaagtaaagtactagtgacttcacgtagcgacacggtagctaacatgatgggcacttacacttcttacaatttgcaagggctttctaaagaggactc |
393 |
Q |
| |
|
||||||||||||| |||||||| ||||||| || | | ||||| |||||| |||| |||| ||||||| ||||||||| ||||||| |||||| || |
|
|
| T |
29750657 |
aaggaagtaaagttttagtgactacacgtagtcactcaattgctaaaatgatgtgcacaaacacatcttacactttgcaaggtctttctagagaggattc |
29750756 |
T |
|
| Q |
394 |
attgtctgtatttgtaaaatgggcttttaaagagggagaaaagagtaaacatcctgaactaatggagattgaaaaagatattgtgcttaaatgtggaggg |
493 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||| ||| ||| |||| || | || ||||||| ||||| ||||| | |||||||||||| |
|
|
| T |
29750757 |
cttgtctgtatttgtcaaatgggcatttaaagagggagaagagaaaaaatatccaaaattgatagagattgggaaagaaattgttcaaaaatgtggaggg |
29750856 |
T |
|
| Q |
494 |
cttccattggccctaaggacattggggagttcactgttcttaaaagttgatatacaagagtggaagtttgttagggacaatgagatttggaatttaccgc |
593 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29750857 |
cttcctttggccctaagaacattggggagttcattgttcttaaaagatgatattgaagagtggaagtttgttagggacaatgagatttggaatttaccac |
29750956 |
T |
|
| Q |
594 |
aaaaaga |
600 |
Q |
| |
|
||||||| |
|
|
| T |
29750957 |
aaaaaga |
29750963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 196 - 598
Target Start/End: Original strand, 29743522 - 29743928
Alignment:
| Q |
196 |
acttgctggtcaaaagttcttacttgttttggacgatgtgtggaatgagaatcgtgtcaaatgggaagaatttaggggtttaataccagcaggtgctcaa |
295 |
Q |
| |
|
|||||||||| |||| ||||| || || ||||| || || ||||||||| ||| |||||||||| ||| | | | |||| ||| || ||| | | || |
|
|
| T |
29743522 |
acttgctggtaaaaaattctttctcgtcttggatgacgtatggaatgaggatcatgtcaaatggatagaggtgaagaatttattacaagtaggagatgaa |
29743621 |
T |
|
| Q |
296 |
ggaagtaaagtactagtgacttcacgtagcgacacggtagctaacatgatgggcacttacacttcttacaatttgcaagggctttctaaagaggactcat |
395 |
Q |
| |
|
||||||||||| |||||||| |||||||| || | | ||| | |||||| |||| | || || |||| |||| |||| || |||| | |||| || | |
|
|
| T |
29743622 |
ggaagtaaagttttagtgactacacgtagccactcaattgctgaaatgatgtgcacaaatacatcatacactttggaaggtctctctagaaaggattcct |
29743721 |
T |
|
| Q |
396 |
tgtctgtatttgtaaaatgggcttttaaagagggagaaaagagtaaacatcctgaactaatggagattgaaaaagatattgtgcttaaatgtggagggct |
495 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||| | | ||| |||| || | || ||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
29743722 |
tgtctgtatttgtcaaatgggcatttaaagagggagaagacaaaaaatatccaaaattgatagagattgggaaagaaattgtgcaaaaatgtggagggct |
29743821 |
T |
|
| Q |
496 |
tccattggccctaaggacattggggagttcactgttcttaa----aagttgatatacaagagtggaagtttgttagggacaatgagatttggaatttacc |
591 |
Q |
| |
|
||| ||||||||||| ||||||||||||||| ||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29743822 |
tcctttggccctaagaacattggggagttcattgttcttaattaaaagatgatattgaagagtggaagtttgttagggacaatgagatttggaatttacc |
29743921 |
T |
|
| Q |
592 |
gcaaaaa |
598 |
Q |
| |
|
|||||| |
|
|
| T |
29743922 |
acaaaaa |
29743928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 29743325 - 29743416
Alignment:
| Q |
17 |
gtgtttaatgataagagtgtagttgactcttttccattaaagatgtggatatgcgtctcggatgattttgatgttaagaatctgcttgttaa |
108 |
Q |
| |
|
||||| |||||||||||| ||| || |||||||||||||||||||| | || ||||| ||||||||||| || || ||||||||||||| |
|
|
| T |
29743325 |
gtgttcaatgataagagtttagacgagacttttccattaaagatgtgggtgtgtgtctccgatgattttgaacttcagcatctgcttgttaa |
29743416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 7e-63; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 198 - 612
Target Start/End: Original strand, 49352169 - 49352583
Alignment:
| Q |
198 |
ttgctggtcaaaagttcttacttgttttggacgatgtgtggaatgagaatcgtgtcaaatgggaagaatttaggggtttaataccagcaggtgctcaagg |
297 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||||||| ||||||||| ||||||||||||||| || || | | |||||||| || ||| ||| ||| |
|
|
| T |
49352169 |
ttgctggtaaaaagttcttactcgtcttggacgatgtatggaatgaggatcgtgtcaaatgggttgagttgaagtatttaatacaagtaggcgctgaaga |
49352268 |
T |
|
| Q |
298 |
aagtaaagtactagtgacttcacgtagcgacacggtagctaacatgatgggcacttacacttcttacaatttgcaagggctttctaaagaggactcattg |
397 |
Q |
| |
|
||||||||| | |||||| |||||||| || | | || || ||||||||||| |||| || |||| |||| |||| |||||| |||||| || || |
|
|
| T |
49352269 |
aagtaaagtcttggtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcatacattttggaaggtctttctctagaggattcctta |
49352368 |
T |
|
| Q |
398 |
tctgtatttgtaaaatgggcttttaaagagggagaaaagagtaaacatcctgaactaatggagattgaaaaagatattgtgcttaaatgtggagggcttc |
497 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| |||| ||| ||| |||| ||| | ||||||||| ||||| ||||| | |||||||||||||||| |
|
|
| T |
49352369 |
tctgtgtttgtcaaatgggcttttaaagaggaagaagagaaaaaatatccagaattggtggagattgggaaagaaattgtacaaaaatgtggagggcttc |
49352468 |
T |
|
| Q |
498 |
cattggccctaaggacattggggagttcactgttcttaaaagttgatatacaagagtggaagtttgttagggacaatgagatttggaatttaccgcaaaa |
597 |
Q |
| |
|
| ||||||||||| ||||| |||||||| || ||||||||| ||||| | |||||||||||||| | || |||| |||||||||||||||||| ||||| |
|
|
| T |
49352469 |
ctttggccctaagaacattagggagttctctattcttaaaatttgatgttgaagagtggaagtttatcagagacagtgagatttggaatttaccacaaaa |
49352568 |
T |
|
| Q |
598 |
agatgaggacatttt |
612 |
Q |
| |
|
||| || |||||||| |
|
|
| T |
49352569 |
agaagatgacatttt |
49352583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 385 - 612
Target Start/End: Original strand, 49340980 - 49341207
Alignment:
| Q |
385 |
agaggactcattgtctgtatttgtaaaatgggcttttaaagagggagaaaagagtaaacatcctgaactaatggagattgaaaaagatattgtgcttaaa |
484 |
Q |
| |
|
|||||| || |||||||||||||| |||||||||||| ||||||||||| ||| || |||| || | |||||||||| ||||| ||||| | ||| |
|
|
| T |
49340980 |
agaggattccttgtctgtatttgtcaaatgggcttttgaagagggagaagagaagaactatccaaaattgatggagattgggaaagaaattgtacaaaaa |
49341079 |
T |
|
| Q |
485 |
tgtggagggcttccattggccctaaggacattggggagttcactgttcttaaaagttgatatacaagagtggaagtttgttagggacaatgagatttgga |
584 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| || |||||||||| ||||||| |||||||||||||| ||||||| ||| |||||| |
|
|
| T |
49341080 |
tgtggagggcttcctttggccctaagaacattggggagttctctattcttaaaagatgatatagaagagtggaagtttaacagggacagtgaaatttggg |
49341179 |
T |
|
| Q |
585 |
atttaccgcaaaaagatgaggacatttt |
612 |
Q |
| |
|
||||||| ||||||||||| |||||||| |
|
|
| T |
49341180 |
atttaccacaaaaagatgacgacatttt |
49341207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 49351964 - 49352055
Alignment:
| Q |
17 |
gtgtttaatgataagagtgtagttgactcttttccattaaagatgtggatatgcgtctcggatgattttgatgttaagaatctgcttgttaa |
108 |
Q |
| |
|
|||||||||||||||||| ||| ||| |||||||||| ||||||||| | || ||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
49351964 |
gtgtttaatgataagagtttagatgagacttttccattgaagatgtgggtgtgtgtctctgatgattttgaacttaagaatctgcttgttaa |
49352055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 49340600 - 49340691
Alignment:
| Q |
17 |
gtgtttaatgataagagtgtagttgactcttttccattaaagatgtggatatgcgtctcggatgattttgatgttaagaatctgcttgttaa |
108 |
Q |
| |
|
|||||||||||||||||| ||| ||| |||||||||| ||||||||| | || ||||| ||||||||||| || |||||||||||||||| |
|
|
| T |
49340600 |
gtgtttaatgataagagtttagatgagacttttccattgaagatgtgggtgtgtgtctctgatgattttgaacttgagaatctgcttgttaa |
49340691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 49340808 - 49340911
Alignment:
| Q |
201 |
ctggtcaaaagttcttacttgttttggacgatgtgtggaatgagaatcgtgtcaaatgggaagaatttaggggtttaataccagcaggtgctcaaggaag |
300 |
Q |
| |
|
||||| ||||||||||||| || ||||||||||| ||||||||| ||||||||||||||| || || | | |||||||| || ||||||| ||||||| |
|
|
| T |
49340808 |
ctggtaaaaagttcttactcgtcttggacgatgtatggaatgaggatcgtgtcaaatgggttgagttgaagaatttaatacaagtaggtgctgaaggaag |
49340907 |
T |
|
| Q |
301 |
taaa |
304 |
Q |
| |
|
|||| |
|
|
| T |
49340908 |
taaa |
49340911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 198 - 612
Target Start/End: Complemental strand, 32784106 - 32783686
Alignment:
| Q |
198 |
ttgctggtcaaaagttcttacttgttttggacgatgtgtggaatgagaatcgtgtcaaatgggaagaatttaggggtttaataccagcaggtgctcaagg |
297 |
Q |
| |
|
|||||||| |||||||||| || || ||||||||||| ||||| || ||||||||||||||| || || | | |||||||| || ||||||| |||| |
|
|
| T |
32784106 |
ttgctggtaaaaagttcttgctcgtcttggacgatgtatggaaccaggatcgtgtcaaatgggttgagttgaagaatttaatacaagtaggtgctgaagg |
32784007 |
T |
|
| Q |
298 |
aagtaaagtactagtgacttcacgtagcgacacggtagctaacatgatgggcacttacacttcttacaatttgcaa------gggctttctaaagaggac |
391 |
Q |
| |
|
||||||||| |||||||| |||||||| || | | || || ||||||||||| |||| || |||| |||| || || |||||| ||||| |
|
|
| T |
32784006 |
aagtaaagtcttagtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcatacattttggaattgaaaggtctttctccggaggat |
32783907 |
T |
|
| Q |
392 |
tcattgtctgtatttgtaaaatgggcttttaaagagggagaaaagagtaaacatcctgaactaatggagattgaaaaagatattgtgcttaaatgtggag |
491 |
Q |
| |
|
|| |||||||||||| | |||||||||||||||||||||||| ||| || |||| ||| | ||| |||||| ||||| ||||| | |||||||||| |
|
|
| T |
32783906 |
tccttgtctgtatttatcaaatgggcttttaaagagggagaagagaaaaactatccagaattgatgaagattgggaaagaaattgtacaaaaatgtggag |
32783807 |
T |
|
| Q |
492 |
ggcttccattggccctaaggacattggggagttcactgttcttaaaagttgatatacaagagtggaagtttgttagggacaatgagatttggaatttacc |
591 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||||| || ||| ||||||||||| | |||||||||||||| | || |||| ||| |||||||||||||| |
|
|
| T |
32783806 |
ggcttcctttggccctaagaacatcggggagttctctattcctaaaagttgatgtggaagagtggaagtttatcagagacagtgaaatttggaatttacc |
32783707 |
T |
|
| Q |
592 |
gcaaaaagatgaggacatttt |
612 |
Q |
| |
|
|||||||| || |||||||| |
|
|
| T |
32783706 |
tcaaaaagaagatgacatttt |
32783686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 32784311 - 32784220
Alignment:
| Q |
17 |
gtgtttaatgataagagtgtagttgactcttttccattaaagatgtggatatgcgtctcggatgattttgatgttaagaatctgcttgttaa |
108 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||||| |||| ||||||||| | || ||||| |||||||||| |||||||||||||| |||| |
|
|
| T |
32784311 |
gtgtttaatgataagagtttagatgagactttttcattgaagatgtgggtttgtgtctctgatgattttggacttaagaatctgcttcttaa |
32784220 |
T |
|
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