View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7648_low_4 (Length: 602)
Name: NF7648_low_4
Description: NF7648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7648_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Original strand, 43870074 - 43870651
Alignment:
| Q |
1 |
ttagaattcctattgggcagtaccttttctgtttagaccctacttacaggtgcaaacaattcaattaaactgtcgcactcacacaactattatgggctat |
100 |
Q |
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| T |
43870074 |
ttagaattcctattgggcagtaccttttctgtttagaccctacttacaggtgcaaacaattcaattaaactgtcgcactcacacaactattatgggctat |
43870173 |
T |
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| Q |
101 |
gtctaacgttcacaatttagtggattccnnnnnnnnnctttctaggaattaatggaagtcaagaaaatagaattaatcttgtcaatctagcaaacaaata |
200 |
Q |
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| T |
43870174 |
gtctaacgttcacaatttagtggattcctttt------tttccaggaattaatggaagtcaagaaaatagaattaatcttgtcaatctagctaacaaata |
43870267 |
T |
|
| Q |
201 |
ttaagttggtcagagtgaaactcaacttaggtttcttaagcaagattttgtgttcatgccttatagatggnnnnnnnnttgtgcttaaaacgagagacat |
300 |
Q |
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| T |
43870268 |
ttaagttggtcagagtgaaactcaacttaggtttgttaagcaagattttgtgttcatgccttgtagatggaaaaaaaattgtgcttaaaacgagagacct |
43870367 |
T |
|
| Q |
301 |
cattaaagatggttatataaattctcgatgaaaattagtcatcaatatagtaagaataagtcaccgat---aaagttagaaaatacttcacaccgataac |
397 |
Q |
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|||||||| |||||||||| |||| |||||||||||||| ||||| |||||||||||||| | | ||||||||||||||||||||||||||||| |
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| T |
43870368 |
cattaaaggtggttatatag----tcgacgaaaattagtcatcgatataataagaataagtcactgctggtaaagttagaaaatacttcacaccgataac |
43870463 |
T |
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| Q |
398 |
aaggttaaaaatatcttgtcaattcagctctatggtttcatgaaaccatacaatacaaggctaaaagaca-gctagtatgttactacaattgtcaagtca |
496 |
Q |
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| T |
43870464 |
aaggttaaaaatatct-gtcaattcagctctatggtttcataaaaccatacaatacaaggctaaaagacatgctagtatgttactacaattgtcaagtca |
43870562 |
T |
|
| Q |
497 |
aatatagttggaatctcttccaatgagtgcatgaaaattgattcactgaaattttaataatctgcaagaaattttttaattatagaagt |
585 |
Q |
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| T |
43870563 |
aatatagttggaatctcttccaatgagtgcatgaaaattgattcactgatattttaataatctgcaagaaattttttaattatagaagt |
43870651 |
T |
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