View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7648_low_6 (Length: 558)

Name: NF7648_low_6
Description: NF7648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7648_low_6
NF7648_low_6
[»] chr4 (12 HSPs)
chr4 (16-539)||(35335547-35336070)
chr4 (9-229)||(35335408-35335628)
chr4 (10-229)||(35335277-35335496)
chr4 (16-245)||(16591879-16592096)
chr4 (300-397)||(16591733-16591830)
chr4 (148-245)||(16602449-16602546)
chr4 (16-93)||(16602469-16602546)
chr4 (9-97)||(35335672-35335760)
chr4 (300-397)||(16602303-16602400)
chr4 (332-414)||(35327418-35327500)
chr4 (361-445)||(5341769-5341854)
chr4 (341-399)||(51457443-51457504)
[»] chr5 (2 HSPs)
chr5 (184-272)||(20964065-20964153)
chr5 (199-250)||(20963991-20964042)
[»] chr3 (4 HSPs)
chr3 (174-254)||(3175712-3175792)
chr3 (184-271)||(3175908-3175995)
chr3 (345-430)||(3545681-3545767)
chr3 (345-430)||(3549431-3549517)
[»] chr2 (2 HSPs)
chr2 (330-385)||(41525283-41525338)
chr2 (189-271)||(41524854-41524936)
[»] chr1 (4 HSPs)
chr1 (199-250)||(24541211-24541262)
chr1 (189-271)||(24540922-24541004)
chr1 (54-100)||(24541009-24541055)
chr1 (174-271)||(24541090-24541187)


Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 16 - 539
Target Start/End: Original strand, 35335547 - 35336070
Alignment:
Q  16 gatgcgttggaggttgaacaagggaatgagcaggagggtgttgatggcggtgatgggttggaggtttagcatgatgaggaggatgaattggaacatgttt 115  Q
    |||| ||||||||||||| | ||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  35335547 gatgtgttggaggttgaataggggaatgagcaggagtgtgttgatgacggtgatgggttggaggtttagcatggtgaggaggatgaactggaacatgttt 35335646  T
Q  116 gtgaacaggggcatgagcaggagagtggtggtgatgtgttggaggttgaacaggggtgtgagcaggaggatgttgatgatgacgatgggttgggggttta 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  35335647 gtgaacaggggcatgagcaggagagtggtggtgatgtgttggaggttgaacaggggcgtgagcaggaggatgttgatgatggcgatgggttgggggttta 35335746  T
Q  216 gtatgatgaggagggtgtaaaggagtgtgaacatgggaacgagaaggggttggtgaaggattgtgatggtagtggtgatgcgatttagccggtgggtgaa 315  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||    
T  35335747 gtatgatgaggagggtgtaaaggagcgtgaacatgggaacgagaaggggttggtgaaggattgtgatgatagtggtgaggggatttagccggtgggtgaa 35335846  T
Q  316 gtggtgttggtgtgtgaagagattcaagctcttcagcaaatgcaatgaacgaggttaattggagtaagagtagcaacattgcaagagtgttggccatttt 415  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35335847 gttgtgttggtgtgtgaagagattcaagctcttcagcaaatgcaatgaacgaggttaattggagtaagagtagcaacattgcaagagttttggccatttt 35335946  T
Q  416 ctttgcaagagaaaataacctagaaagagaggaaatgagaaaggaagggatgatgttgtgagagtgaccgagtgtgagacttgatttatataggagctga 515  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35335947 ctttgtaagagaaaataacctagaaagagaggaaatgagagaggaagggatgatgttgtgagagtgaccgagtgtgagacttgatttatataggagctga 35336046  T
Q  516 tcaccataatcattgcaatttttg 539  Q
    ||||||||||||||||||||||||    
T  35336047 tcaccataatcattgcaatttttg 35336070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 35335408 - 35335628
Alignment:
Q  9 tggtggtgatgcgttggaggttgaacaagggaatgagcaggagggtgttgatggcggtgatgggttggaggtttagcatgatgaggaggatgaattggaa 108  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  35335408 tggtggtgatgcgttggaggttgaacaggggaatgagtaggagggtgttgatggcgatgatgggttggaggtttagcatgatgaggaggatgaactggaa 35335507  T
Q  109 catgtttgtgaacaggggcatgagcaggagagtggtggtgatgtgttggaggttgaacaggggtgtgagcaggaggatgttgatgatgacgatgggttgg 208  Q
    |||||||||||| ||| ||||||||||||||||| ||| |||||||||||||||||| |||||  ||||||||||  ||||||||| |  ||||||||||    
T  35335508 catgtttgtgaataggagcatgagcaggagagtgatggcgatgtgttggaggttgaataggggaatgagcaggagtgtgttgatgacggtgatgggttgg 35335607  T
Q  209 gggtttagtatgatgaggagg 229  Q
     ||||||| ||| ||||||||    
T  35335608 aggtttagcatggtgaggagg 35335628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 35335277 - 35335496
Alignment:
Q  10 ggtggtgatgcgttggaggttgaacaagggaatgagcaggagggtgttgatggcggtgatgggttggaggtttagcatgatgaggaggatgaattggaac 109  Q
    |||||||||| ||||| ||||||| | | | |||||   ||||| ||||||||  |||||| ||||||||||| |||||  |||||||||| | ||||||    
T  35335277 ggtggtgatgtgttggtggttgaataggcgcatgagttagagggcgttgatggttgtgatgagttggaggttttgcatggcgaggaggatgtactggaac 35335376  T
Q  110 atgtttgtgaacaggggcatgagcaggagagtggtggtgatgtgttggaggttgaacaggggtgtgagcaggaggatgttgatgatgacgatgggttggg 209  Q
    |||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||  |||| |||||| ||||||||  || ||||||||||     
T  35335377 atgtttgtgaacaggggcatgagcaggaggctggtggtgatgcgttggaggttgaacaggggaatgagtaggagggtgttgatggcgatgatgggttgga 35335476  T
Q  210 ggtttagtatgatgaggagg 229  Q
    ||||||| ||||||||||||    
T  35335477 ggtttagcatgatgaggagg 35335496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 16592096 - 16591879
Alignment:
Q  16 gatgcgttggaggttgaacaagggaatgagcaggagggtgttgatggcggtgatgggttggaggtttagcatgatgaggaggatgaattggaacatgttt 115  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| || | ||| ||||     ||||    || |     
T  16592096 gatgggttggaggttgaacaggggcatgagcaggagggtgttgatggtggtgatgggttggaggtttaacagggtgacgagg-----ttgg----tgatg 16592006  T
Q  116 gtgaacaggggcatgagcaggagagtggtggtgatgtgttggaggttgaacaggggtgtgagcaggaggatgttgatgatgacgatgggttgggggttta 215  Q
     |||| ||||||||||| |||||   |||| ||||| | || |||||||| |||||  ||||||||||| ||||| || ||  || ||||||| ||||||    
T  16592005 atgaataggggcatgagaaggag---ggtgttgatgggatgaaggttgaagaggggcatgagcaggagggtgttggtggtggtgacgggttggaggttta 16591909  T
Q  216 gtatgatgaggagggtgtaaaggagtgtga 245  Q
    | | | |||| |||||||||||||||||||    
T  16591908 gcagggtgagaagggtgtaaaggagtgtga 16591879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 397
Target Start/End: Complemental strand, 16591830 - 16591733
Alignment:
Q  300 ttagccggtgggtgaagtggtgttggtgtgtgaagagattcaagctcttcagcaaatgcaatgaacgaggttaattggagtaagagtagcaacattgc 397  Q
    ||||||| ||| |||||||||||||||  |||||| |||||||| |||||| ||||| || |||| ||  ||||||||||||||||||||||||||||    
T  16591830 ttagccgatggatgaagtggtgttggttcgtgaagggattcaagttcttcaccaaatacattgaaagaaattaattggagtaagagtagcaacattgc 16591733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 16602546 - 16602449
Alignment:
Q  148 gatgtgttggaggttgaacaggggtgtgagcaggaggatgttgatgatgacgatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtga 245  Q
    |||| |||||||||||||||||||  ||||||||||| |||||||| |   |||||||||| ||||||| ||| |||| |||||||||||||||||||    
T  16602546 gatgggttggaggttgaacaggggcatgagcaggagggtgttgatggtagggatgggttggaggtttagcatggtgagaagggtgtaaaggagtgtga 16602449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 16602546 - 16602469
Alignment:
Q  16 gatgcgttggaggttgaacaagggaatgagcaggagggtgttgatggcggtgatgggttggaggtttagcatgatgag 93  Q
    |||| ||||||||||||||| ||| ||||||||||||||||||||||  | |||||||||||||||||||||| ||||    
T  16602546 gatgggttggaggttgaacaggggcatgagcaggagggtgttgatggtagggatgggttggaggtttagcatggtgag 16602469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 35335672 - 35335760
Alignment:
Q  9 tggtggtgatgcgttggaggttgaacaagggaatgagcaggagggtgttgatggcggtgatgggttggaggtttagcatgatgaggagg 97  Q
    ||||||||||| ||||||||||||||| |||  ||||||||||| ||||||||  || |||||||||| ||||||| ||||||||||||    
T  35335672 tggtggtgatgtgttggaggttgaacaggggcgtgagcaggaggatgttgatgatggcgatgggttgggggtttagtatgatgaggagg 35335760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 300 - 397
Target Start/End: Complemental strand, 16602400 - 16602303
Alignment:
Q  300 ttagccggtgggtgaagtggtgttggtgtgtgaagagattcaagctcttcagcaaatgcaatgaacgaggttaattggagtaagagtagcaacattgc 397  Q
    ||||||||| | |||||||||||||||   |||||||||||||| |||||||||||| || |||| ||  | |||||||| |||||||||||||||||    
T  16602400 ttagccggtagatgaagtggtgttggttcatgaagagattcaagttcttcagcaaatacattgaaagaaatcaattggagaaagagtagcaacattgc 16602303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 332 - 414
Target Start/End: Original strand, 35327418 - 35327500
Alignment:
Q  332 aagagattcaagctcttcagcaaatgcaatgaacgaggttaattggagtaagagtagcaacattgcaagagtgttggccattt 414  Q
    ||||| |||||||||||| ||||||| | |||| ||| | | ||||||||||||||||||||||||||| || || |||||||    
T  35327418 aagagtttcaagctcttctgcaaatgtagtgaaagagatgagttggagtaagagtagcaacattgcaagggttttagccattt 35327500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 361 - 445
Target Start/End: Complemental strand, 5341854 - 5341769
Alignment:
Q  361 tgaacgaggttaattggagtaagagtagcaacattgcaagagtgttggccat-tttctttgcaagagaaaataacctagaaagaga 445  Q
    |||| ||||||| |||||||||||||||||| | ||| ||||| |||||||| ||||| || |||||||||  |||| ||||||||    
T  5341854 tgaaagaggttagttggagtaagagtagcaaaaatgctagagttttggccatatttctatgtaagagaaaacgaccttgaaagaga 5341769  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 51457504 - 51457443
Alignment:
Q  341 aagctcttcagcaaatgcaatgaacgagg---ttaattggagtaagagtagcaacattgcaa 399  Q
    |||||||| ||||||||||||||| ||||   ||| ||| ||||||||||||||||||||||    
T  51457504 aagctcttgagcaaatgcaatgaaagaggaggttagttgaagtaagagtagcaacattgcaa 51457443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 20964153 - 20964065
Alignment:
Q  184 gatgttgatgatgacgatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatgggaacgagaaggggttggtgaa 272  Q
    |||| ||||||||| |||||||||||||||| | | | ||| |||| |||| ||||||||||||||||||| ||| ||||| |||||||    
T  20964153 gatgatgatgatgatgatgggttgggggttttgcagggtgacgaggatgtataggagtgtgaacatgggaaggagtaggggatggtgaa 20964065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 20964042 - 20963991
Alignment:
Q  199 gatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatg 250  Q
    ||||||| |||||||||| | | |||||||| ||||||||||||||||||||    
T  20964042 gatgggtcgggggtttagcagggtgaggaggatgtaaaggagtgtgaacatg 20963991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 3175712 - 3175792
Alignment:
Q  174 tgagcaggaggatgttgatgatgacgatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatgggaa 254  Q
    ||||||||||  || ||||||||| |||||||||||||||| | | | ||| || | ||||||||||||||||||||||||    
T  3175712 tgagcaggagagtgatgatgatgatgatgggttgggggttttgcagggtgacgatgatgtaaaggagtgtgaacatgggaa 3175792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 3175908 - 3175995
Alignment:
Q  184 gatgttgatgatgacgatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatgggaacgagaaggggttggtga 271  Q
    |||| ||||||||| |||||||||| ||||| | | ||||| |||| |||||||||||||||||||| ||| ||| | ||| ||||||    
T  3175908 gatgatgatgatgatgatgggttggaggttttgcaggatgacgaggatgtaaaggagtgtgaacatgagaaggagcaagggatggtga 3175995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 430
Target Start/End: Original strand, 3545681 - 3545767
Alignment:
Q  345 tcttcagcaaatgcaatgaacgaggttaattggagtaagagtagcaacattgcaagagtgttggcca-ttttctttgcaagagaaaa 430  Q
    ||||||||||||||| ||||  ||| || ||||||||  ||||| || | ||| ||||| ||||||| |||||||||||||||||||    
T  3545681 tcttcagcaaatgcagtgaaataggctagttggagtagaagtagtaaaaatgctagagttttggccatttttctttgcaagagaaaa 3545767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 430
Target Start/End: Original strand, 3549431 - 3549517
Alignment:
Q  345 tcttcagcaaatgcaatgaacgaggttaattggagtaagagtagcaacattgcaagagtgttggcca-ttttctttgcaagagaaaa 430  Q
    ||||||||||||||| ||||  ||| || ||||||||  ||||| || | ||| ||||| ||||||| |||||||||||||||||||    
T  3549431 tcttcagcaaatgcagtgaaataggctagttggagtagaagtagtaaaaatgctagagttttggccatttttctttgcaagagaaaa 3549517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 385
Target Start/End: Original strand, 41525283 - 41525338
Alignment:
Q  330 tgaagagattcaagctcttcagcaaatgcaatgaacgaggttaattggagtaagag 385  Q
    ||||||| ||| ||||||||||||||||| ||||| ||||||| ||||||||||||    
T  41525283 tgaagagtttctagctcttcagcaaatgctatgaaggaggttatttggagtaagag 41525338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 41524854 - 41524936
Alignment:
Q  189 tgatgatgacgatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatgggaacgagaaggggttggtga 271  Q
    |||||| || |||||||||||||||| | | | ||| |||| | ||||||||| |||||||||||| ||| ||||| ||||||    
T  41524854 tgatgacgatgatgggttgggggttttgcagggtgacgaggatataaaggagtatgaacatgggaaggagcaggggatggtga 41524936  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 24541211 - 24541262
Alignment:
Q  199 gatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatg 250  Q
    ||||||| |||||||||| | | |||||||| ||||||||||||||||||||    
T  24541211 gatgggtcgggggtttagcagggtgaggaggatgtaaaggagtgtgaacatg 24541262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 24540922 - 24541004
Alignment:
Q  189 tgatgatgacgatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatgggaacgagaaggggttggtga 271  Q
    |||||||||  |||||| |||||||| | | | ||| |||| |||||||||||||||||||||||| | | ||||| ||||||    
T  24540922 tgatgatgataatgggtggggggttttgcagggtgacgaggatgtaaaggagtgtgaacatgggaaggggcaggggatggtga 24541004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 24541009 - 24541055
Alignment:
Q  54 tgttgatggcggtgatgggttggaggtttagcatgatgaggaggatg 100  Q
    ||||| ||||||||||||||||||||||| ||| | |||||||||||    
T  24541009 tgttggtggcggtgatgggttggaggtttggcagggtgaggaggatg 24541055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 271
Target Start/End: Original strand, 24541090 - 24541187
Alignment:
Q  174 tgagcaggaggatgttgatgatgacgatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatgggaacgagaaggggttggtga 271  Q
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T  24541090 tgagcaggagagtgttgttgatgatgatgagttgggggttttgctgggtgacgaggatgtaaaggagggtgaacatgggaaggcgtaggggatggtga 24541187  T

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