View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7650_high_1 (Length: 515)

Name: NF7650_high_1
Description: NF7650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7650_high_1
NF7650_high_1
[»] chr8 (2 HSPs)
chr8 (466-504)||(41344562-41344600)
chr8 (466-494)||(1370188-1370216)
[»] chr4 (6 HSPs)
chr4 (466-498)||(16004220-16004252)
chr4 (467-498)||(24772817-24772848)
chr4 (468-496)||(25476769-25476797)
chr4 (466-494)||(34616491-34616519)
chr4 (466-494)||(55927134-55927162)
chr4 (466-494)||(56364159-56364187)
[»] chr1 (6 HSPs)
chr1 (466-498)||(46948125-46948157)
chr1 (466-496)||(40610377-40610407)
chr1 (468-498)||(43755581-43755611)
chr1 (466-494)||(7645447-7645475)
chr1 (466-494)||(24981679-24981707)
chr1 (466-494)||(46907126-46907154)
[»] chr3 (5 HSPs)
chr3 (467-498)||(19418054-19418085)
chr3 (466-496)||(20162588-20162618)
chr3 (466-496)||(41111965-41111995)
chr3 (466-494)||(23592387-23592415)
chr3 (466-494)||(49131004-49131032)
[»] chr6 (3 HSPs)
chr6 (468-498)||(16336965-16336995)
chr6 (466-496)||(34021065-34021095)
chr6 (466-503)||(30906556-30906593)
[»] chr5 (3 HSPs)
chr5 (466-496)||(20719908-20719938)
chr5 (466-496)||(40566109-40566139)
chr5 (466-494)||(17625916-17625944)
[»] scaffold0002 (1 HSPs)
scaffold0002 (469-498)||(6573-6602)
[»] chr2 (6 HSPs)
chr2 (469-498)||(22390298-22390327)
chr2 (466-498)||(2013178-2013210)
chr2 (466-494)||(14714136-14714164)
chr2 (466-498)||(23344882-23344914)
chr2 (466-494)||(25270692-25270720)
chr2 (466-498)||(44189971-44190003)
[»] chr7 (2 HSPs)
chr7 (466-494)||(7701464-7701492)
chr7 (466-494)||(46022377-46022405)


Alignment Details
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 504
Target Start/End: Original strand, 41344562 - 41344600
Alignment:
Q  466 agtgatatttgaacatccatttgagacaactctgatgat 504  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  41344562 agtgatatttgaacatccatttgagacaactcttatgat 41344600  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 1370188 - 1370216
Alignment:
Q  466 agtgatatttgaacatccatttgagacaa 494  Q
    |||||||||||||||||||||||||||||    
T  1370188 agtgatatttgaacatccatttgagacaa 1370216  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 498
Target Start/End: Original strand, 16004220 - 16004252
Alignment:
Q  466 agtgatatttgaacatccatttgagacaactct 498  Q
    |||||||||||||||||||||||||||||||||    
T  16004220 agtgatatttgaacatccatttgagacaactct 16004252  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 498
Target Start/End: Complemental strand, 24772848 - 24772817
Alignment:
Q  467 gtgatatttgaacatccatttgagacaactct 498  Q
    ||||||||||||||||||||||||||||||||    
T  24772848 gtgatatttgaacatccatttgagacaactct 24772817  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 496
Target Start/End: Complemental strand, 25476797 - 25476769
Alignment:
Q  468 tgatatttgaacatccatttgagacaact 496  Q
    |||||||||||||||||||||||||||||    
T  25476797 tgatatttgaacatccatttgagacaact 25476769  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 34616519 - 34616491
Alignment:
Q  466 agtgatatttgaacatccatttgagacaa 494  Q
    |||||||||||||||||||||||||||||    
T  34616519 agtgatatttgaacatccatttgagacaa 34616491  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 55927162 - 55927134
Alignment:
Q  466 agtgatatttgaacatccatttgagacaa 494  Q
    |||||||||||||||||||||||||||||    
T  55927162 agtgatatttgaacatccatttgagacaa 55927134  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 56364159 - 56364187
Alignment:
Q  466 agtgatatttgaacatccatttgagacaa 494  Q
    |||||||||||||||||||||||||||||    
T  56364159 agtgatatttgaacatccatttgagacaa 56364187  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 498
Target Start/End: Complemental strand, 46948157 - 46948125
Alignment:
Q  466 agtgatatttgaacatccatttgagacaactct 498  Q
    |||||||||||||||||||||||||||||||||    
T  46948157 agtgatatttgaacatccatttgagacaactct 46948125  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 496
Target Start/End: Complemental strand, 40610407 - 40610377
Alignment:
Q  466 agtgatatttgaacatccatttgagacaact 496  Q
    |||||||||||||||||||||||||||||||    
T  40610407 agtgatatttgaacatccatttgagacaact 40610377  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 498
Target Start/End: Original strand, 43755581 - 43755611
Alignment:
Q  468 tgatatttgaacatccatttgagacaactct 498  Q
    |||||||||||||||||||||||||||||||    
T  43755581 tgatatttgaacatccatttgagacaactct 43755611  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 7645447 - 7645475
Alignment:
Q  466 agtgatatttgaacatccatttgagacaa 494  Q
    |||||||||||||||||||||||||||||    
T  7645447 agtgatatttgaacatccatttgagacaa 7645475  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 24981679 - 24981707
Alignment:
Q  466 agtgatatttgaacatccatttgagacaa 494  Q
    |||||||||||||||||||||||||||||    
T  24981679 agtgatatttgaacatccatttgagacaa 24981707  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 46907154 - 46907126
Alignment:
Q  466 agtgatatttgaacatccatttgagacaa 494  Q
    |||||||||||||||||||||||||||||    
T  46907154 agtgatatttgaacatccatttgagacaa 46907126  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 498
Target Start/End: Original strand, 19418054 - 19418085
Alignment:
Q  467 gtgatatttgaacatccatttgagacaactct 498  Q
    ||||||||||||||||||||||||||||||||    
T  19418054 gtgatatttgaacatccatttgagacaactct 19418085  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 496
Target Start/End: Original strand, 20162588 - 20162618
Alignment:
Q  466 agtgatatttgaacatccatttgagacaact 496  Q
    |||||||||||||||||||||||||||||||    
T  20162588 agtgatatttgaacatccatttgagacaact 20162618  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 496
Target Start/End: Original strand, 41111965 - 41111995
Alignment:
Q  466 agtgatatttgaacatccatttgagacaact 496  Q
    |||||||||||||||||||||||||||||||    
T  41111965 agtgatatttgaacatccatttgagacaact 41111995  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 23592415 - 23592387
Alignment:
Q  466 agtgatatttgaacatccatttgagacaa 494  Q
    |||||||||||||||||||||||||||||    
T  23592415 agtgatatttgaacatccatttgagacaa 23592387  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 49131032 - 49131004
Alignment:
Q  466 agtgatatttgaacatccatttgagacaa 494  Q
    |||||||||||||||||||||||||||||    
T  49131032 agtgatatttgaacatccatttgagacaa 49131004  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 498
Target Start/End: Original strand, 16336965 - 16336995
Alignment:
Q  468 tgatatttgaacatccatttgagacaactct 498  Q
    |||||||||||||||||||||||||||||||    
T  16336965 tgatatttgaacatccatttgagacaactct 16336995  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 496
Target Start/End: Original strand, 34021065 - 34021095
Alignment:
Q  466 agtgatatttgaacatccatttgagacaact 496  Q
    |||||||||||||||||||||||||||||||    
T  34021065 agtgatatttgaacatccatttgagacaact 34021095  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 503
Target Start/End: Original strand, 30906556 - 30906593
Alignment:
Q  466 agtgatatttgaacatccatttgagacaactctgatga 503  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  30906556 agtgatatttgaacatccatttgaaacaactcttatga 30906593  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 496
Target Start/End: Original strand, 20719908 - 20719938
Alignment:
Q  466 agtgatatttgaacatccatttgagacaact 496  Q
    |||||||||||||||||||||||||||||||    
T  20719908 agtgatatttgaacatccatttgagacaact 20719938  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 496
Target Start/End: Original strand, 40566109 - 40566139
Alignment:
Q  466 agtgatatttgaacatccatttgagacaact 496  Q
    |||||||||||||||||||||||||||||||    
T  40566109 agtgatatttgaacatccatttgagacaact 40566139  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 17625944 - 17625916
Alignment:
Q  466 agtgatatttgaacatccatttgagacaa 494  Q
    |||||||||||||||||||||||||||||    
T  17625944 agtgatatttgaacatccatttgagacaa 17625916  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 498
Target Start/End: Complemental strand, 6602 - 6573
Alignment:
Q  469 gatatttgaacatccatttgagacaactct 498  Q
    ||||||||||||||||||||||||||||||    
T  6602 gatatttgaacatccatttgagacaactct 6573  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 498
Target Start/End: Complemental strand, 22390327 - 22390298
Alignment:
Q  469 gatatttgaacatccatttgagacaactct 498  Q
    ||||||||||||||||||||||||||||||    
T  22390327 gatatttgaacatccatttgagacaactct 22390298  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 498
Target Start/End: Original strand, 2013178 - 2013210
Alignment:
Q  466 agtgatatttgaacatccatttgagacaactct 498  Q
    |||||||||| ||||||||||||||||||||||    
T  2013178 agtgatattttaacatccatttgagacaactct 2013210  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 14714164 - 14714136
Alignment:
Q  466 agtgatatttgaacatccatttgagacaa 494  Q
    |||||||||||||||||||||||||||||    
T  14714164 agtgatatttgaacatccatttgagacaa 14714136  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 498
Target Start/End: Original strand, 23344882 - 23344914
Alignment:
Q  466 agtgatatttgaacatccatttgagacaactct 498  Q
    |||||||||||||||| ||||||||||||||||    
T  23344882 agtgatatttgaacattcatttgagacaactct 23344914  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 25270692 - 25270720
Alignment:
Q  466 agtgatatttgaacatccatttgagacaa 494  Q
    |||||||||||||||||||||||||||||    
T  25270692 agtgatatttgaacatccatttgagacaa 25270720  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 498
Target Start/End: Complemental strand, 44190003 - 44189971
Alignment:
Q  466 agtgatatttgaacatccatttgagacaactct 498  Q
    ||||||||||||||||||||| |||||||||||    
T  44190003 agtgatatttgaacatccattcgagacaactct 44189971  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 7701492 - 7701464
Alignment:
Q  466 agtgatatttgaacatccatttgagacaa 494  Q
    |||||||||||||||||||||||||||||    
T  7701492 agtgatatttgaacatccatttgagacaa 7701464  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 46022377 - 46022405
Alignment:
Q  466 agtgatatttgaacatccatttgagacaa 494  Q
    |||||||||||||||||||||||||||||    
T  46022377 agtgatatttgaacatccatttgagacaa 46022405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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