View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7650_high_14 (Length: 287)

Name: NF7650_high_14
Description: NF7650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7650_high_14
NF7650_high_14
[»] chr5 (5 HSPs)
chr5 (76-265)||(30224557-30224744)
chr5 (61-105)||(30224745-30224789)
chr5 (81-122)||(38137871-38137912)
chr5 (152-249)||(38137921-38138016)
chr5 (196-264)||(41798635-41798703)
[»] chr1 (1 HSPs)
chr1 (1-64)||(3544032-3544095)
[»] chr6 (1 HSPs)
chr6 (1-60)||(14843072-14843131)
[»] chr3 (3 HSPs)
chr3 (1-64)||(31676077-31676140)
chr3 (1-64)||(31920283-31920346)
chr3 (14-63)||(6825971-6826020)
[»] chr7 (2 HSPs)
chr7 (17-64)||(8772006-8772053)
chr7 (19-64)||(1395998-1396043)
[»] chr4 (2 HSPs)
chr4 (17-64)||(26695090-26695137)
chr4 (131-169)||(5556539-5556577)
[»] chr2 (1 HSPs)
chr2 (17-64)||(28399481-28399528)


Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 76 - 265
Target Start/End: Complemental strand, 30224744 - 30224557
Alignment:
Q  76 atttccaaattccaaacgtttcaattttattattctacttcattctcnnnnnnnnctttctctatttcctaattcttctattatcttttgatatatactc 175  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||    
T  30224744 atttccaaattccaaacgtttcaattttattcttctacttcattct-ttttgtttctttctctatttcctaattcttctattatcttttgatatatactc 30224646  T
Q  176 acaagccacaatcatcatactcactattttttacctttcaagaacaaagatttcaccatcttctttctcggtttacgttgatgataagct 265  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30224645 acaagccacaatcatcatactcgcta-tttttacctttcaagaacaaagatttcaccatcttctttctcggtttacgttgatgataagct 30224557  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 30224789 - 30224745
Alignment:
Q  61 aaatgtccacaattaatttccaaattccaaacgtttcaattttat 105  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  30224789 aaatgttcacaattaatttccaaattccaaacgtttcaattttat 30224745  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 38137871 - 38137912
Alignment:
Q  81 caaattccaaacgtttcaattttattattctacttcattctc 122  Q
    ||||||| ||||||| ||||||||||||||||||||||||||    
T  38137871 caaattctaaacgttgcaattttattattctacttcattctc 38137912  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 249
Target Start/End: Original strand, 38137921 - 38138016
Alignment:
Q  152 tctattatcttttgatatatactcacaagccacaatcatcatactcactattttttacctttcaagaacaaagatttcaccatcttctttctcggttt 249  Q
    |||||||||  ||| ||| | |||||||||||||| ||||||||||| || |||| || || ||||||||||||||| |||||||| ||||| |||||    
T  38137921 tctattatcccttggtatgtgctcacaagccacaaccatcatactca-tagtttt-acattccaagaacaaagattttaccatcttatttctaggttt 38138016  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 41798635 - 41798703
Alignment:
Q  196 tcactattttttacctttcaagaacaaagatttcaccatcttctttctcggtttacgttgatgataagc 264  Q
    |||| ||||||||||||||||||||||| ||||| | || ||||||| | |||| | |||||| |||||    
T  41798635 tcacaattttttacctttcaagaacaaatatttcgctatattctttcccagtttgctttgatggtaagc 41798703  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 3544095 - 3544032
Alignment:
Q  1 ggccctcaaagctcggacattagcccaacttttaactccaaataacagagtatcatcagcaaat 64  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3544095 ggccctcaaagctcggacattagcccaacttttaactccaagtaacagagtatcatcagcaaat 3544032  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 14843131 - 14843072
Alignment:
Q  1 ggccctcaaagctcggacattagcccaacttttaactccaaataacagagtatcatcagc 60  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14843131 ggccctcaaagctcggacattagcccaacttttaactccaagtaacagagtatcatcagc 14843072  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 31676077 - 31676140
Alignment:
Q  1 ggccctcaaagctcggacattagcccaacttttaactccaaataacagagtatcatcagcaaat 64  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||| ||| ||||||||||||    
T  31676077 ggccctcaaagctcggacattagcccaacttttatctccaagtaacaaagtgtcatcagcaaat 31676140  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 31920346 - 31920283
Alignment:
Q  1 ggccctcaaagctcggacattagcccaacttttaactccaaataacagagtatcatcagcaaat 64  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||| ||| ||||||||||||    
T  31920346 ggccctcaaagctcggacattagcccaacttttatctccaagtaacaaagtgtcatcagcaaat 31920283  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 6825971 - 6826020
Alignment:
Q  14 cggacattagcccaacttttaactccaaataacagagtatcatcagcaaa 63  Q
    |||||||| |||||||| ||||||||||  | ||||||||||||||||||    
T  6825971 cggacattcgcccaactcttaactccaaggatcagagtatcatcagcaaa 6826020  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 8772006 - 8772053
Alignment:
Q  17 acattagcccaacttttaactccaaataacagagtatcatcagcaaat 64  Q
    |||||||||||||||||  |||| ||||||||||||||||| ||||||    
T  8772006 acattagcccaacttttttctcctaataacagagtatcatctgcaaat 8772053  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 1396043 - 1395998
Alignment:
Q  19 attagcccaacttttaactccaaataacagagtatcatcagcaaat 64  Q
    |||||||||||||||||| |||| ||||| ||||| ||||||||||    
T  1396043 attagcccaacttttaacaccaactaacaaagtattatcagcaaat 1395998  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 26695090 - 26695137
Alignment:
Q  17 acattagcccaacttttaactccaaataacagagtatcatcagcaaat 64  Q
    |||||||||||||||||  |||| ||||||||||||||||| ||||||    
T  26695090 acattagcccaacttttttctcctaataacagagtatcatccgcaaat 26695137  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 5556539 - 5556577
Alignment:
Q  131 ctttctctatttcctaattcttctattatcttttgatat 169  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  5556539 ctttctctatttcctaattcttctattatcccttgatat 5556577  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 28399528 - 28399481
Alignment:
Q  17 acattagcccaacttttaactccaaataacagagtatcatcagcaaat 64  Q
    |||||||||||||||||  |||| ||||||||||||||||| ||||||    
T  28399528 acattagcccaacttttttctcctaataacagagtatcatccgcaaat 28399481  T

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