View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7650_high_18 (Length: 241)
Name: NF7650_high_18
Description: NF7650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7650_high_18 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 4114074 - 4113852
Alignment:
| Q |
19 |
actacccaccaatcctctgctccaatccatctcttctcaaaaaatgggaattctcattcttcctcaaaagggtcatcacaatgggcattcctaaaacttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4114074 |
actacccaccaatcctctgctccaatccatctcttctcaaaaaatgggaattctcattcttcctcaaaagggtcatcacaatgggcattcctaaaacttc |
4113975 |
T |
|
| Q |
119 |
ttggaggtccaagtgtccattccagcaacctacaccattgattcttgctgaaggagtggaggaagcacagtggggagttgaacaaaggaagcgttatgtt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4113974 |
ttggaggtccaagtgtccattccagcaacctccaccattgattcttgctgaaggagtggaggaagcacagtggggagttgaacaaaggaagagttatgtt |
4113875 |
T |
|
| Q |
219 |
aggaaaaggcttgcaaggaaacc |
241 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
4113874 |
aggaaaaggcttgcaaggaaacc |
4113852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University