View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7650_high_5 (Length: 423)

Name: NF7650_high_5
Description: NF7650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7650_high_5
NF7650_high_5
[»] chr1 (9 HSPs)
chr1 (16-410)||(47788080-47788474)
chr1 (17-354)||(47781867-47782204)
chr1 (17-400)||(47811393-47811779)
chr1 (108-222)||(47778050-47778164)
chr1 (119-216)||(6521743-6521840)
chr1 (351-409)||(47782228-47782286)
chr1 (108-178)||(6523734-6523804)
chr1 (119-208)||(6506903-6506992)
chr1 (361-409)||(47778303-47778351)
[»] scaffold0341 (2 HSPs)
scaffold0341 (119-208)||(928-1017)
scaffold0341 (119-208)||(8581-8670)


Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 410
Target Start/End: Original strand, 47788080 - 47788474
Alignment:
Q  16 cagtaaacgccattggaatatgtagaggagacattaatcctcaagattgtcgcaaatgcctaattggttccaaattcaatctaacacaagcatgtccaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47788080 cagtaaacgccattggaatatgtagaggagacattaatcctcaagattgtcgcaaatgcctaattggttccaaattcaatctaacacaagcatgtccaaa 47788179  T
Q  116 caaaaaagaagcaattggatggtacgaggatgagaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctgcttatttt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47788180 caaaaaagaagcaattggatggtacgaggatgagaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctgcttatttt 47788279  T
Q  216 gcatggaacttgaacaatgcaacaatggcagatcaatttaatatcctggtaaaacaattgttgaatgatttaagaagcaaggctataaatggtgactcac 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47788280 gcatggaacttgaacaatgcaacaatggcagatcaatttaatatcttggtaaaacaattgttgaatgatttaagaagcaaggctataaatggtgactcac 47788379  T
Q  316 atcgtaagtatgttgtgggaaaaatgccgggtcctagtagtgatcaaacaatatatggtcttgttcagtgtactcctgacttgtctggtccacag 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47788380 atcgtaagtatgttgtgggaaaaatgccgggtcctagtagtgatcaaacaatatatggtcttgttcagtgtactcctgacttgtctggtccacag 47788474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 354
Target Start/End: Original strand, 47781867 - 47782204
Alignment:
Q  17 agtaaacgccattggaatatgtagaggagacattaatcctcaagattgtcgcaaatgcctaattggttccaaattcaatctaacacaagcatgtccaaac 116  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||    
T  47781867 agtaaacgtcattggaatatgtagaggagacattaatcctcaagactgtcgcaaatgcctaataggttccagattcaatctcacacaagcatgtccaaac 47781966  T
Q  117 aaaaaagaagcaattggatggtacgaggatgagaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctgcttattttg 216  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | || |||||||||||||| || ||||||  |     
T  47781967 aaaaaagaagcaattggatggtacgaggatgagaaatgcatgttacgttattcagaccgttctatattaggcctaaacgaaattgggccagcttatacta 47782066  T
Q  217 catggaacttgaacaatgcaacaatggcagatcaatttaatatcctggtaaaacaattgttgaatgatttaagaagcaaggctataaatggtgactcaca 316  Q
      ||||||| |||||| |||||||||||||||||| ||| |||| | |||| |||| | || ||||||||||||||||||||||||||||||||||||||    
T  47782067 tgtggaactcgaacaacgcaacaatggcagatcaacttagtatcttagtaacacaactattaaatgatttaagaagcaaggctataaatggtgactcaca 47782166  T
Q  317 tcgtaagtatgttgtgggaaaaatgccgggtcctagta 354  Q
    | ||||||||||||| |||| |  ||||||||||||||    
T  47782167 tagtaagtatgttgttggaacatcgccgggtcctagta 47782204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 17 - 400
Target Start/End: Original strand, 47811393 - 47811779
Alignment:
Q  17 agtaaacgccattggaatatgtagaggagacattaatcctcaagattgtcgcaaatgcctaattggttccaaattcaatctaacacaagcatgtccaaac 116  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||||||||||||| ||  || |||| |||| | |||||||| ||||||||||||||    
T  47811393 agtaaacctcattggaatatgtagaggagacattaatcctgaagattgtcgcaaatgtctcgttagttcaaaatcctatctaacagaagcatgtccaaac 47811492  T
Q  117 aaaaaagaagcaattggatggtacgaggatga---gaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctgct-tat 212  Q
    |||||||||||||||||||||||||||| |||   |||||| ||| | ||||||||||||||||| ||| | || || | ||||||  | |||||| ||     
T  47811493 aaaaaagaagcaattggatggtacgaggctgatcagaaatgcatgctgcgttattcagaccgttcgatattaggcctcagcgaaatgtggcctgctataa 47811592  T
Q  213 tttgcatggaacttgaacaatgcaacaatggcagatcaatttaatatcctggtaaaacaattgttgaatgatttaagaagcaaggctataaatggtgact 312  Q
    ||||  |||||| |||||||||||||  ||||||||||||| ||||   || |||||||||||||||||||||||| || ||||||||||||||||||||    
T  47811593 tttgg-tggaacgtgaacaatgcaactttggcagatcaattcaatagtgtgataaaacaattgttgaatgatttaaaaaacaaggctataaatggtgact 47811691  T
Q  313 cacatcgtaagtatgttgtgggaaaaatgccgggtcctagtagtgatcaaacaatatatggtcttgttcagtgtactcctgacttgtc 400  Q
    ||||||||||||||| ||| ||||   |||| |||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||    
T  47811692 cacatcgtaagtatgctgtaggaactttgccaggtcctagtagtgatcaaacaataaatggtcttgttcagtgtacacctgatttgtc 47811779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 47778050 - 47778164
Alignment:
Q  108 tgtccaaacaaaaaagaagcaattggatggtacgaggatgagaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctg 207  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||| ||||| ||||||||||||||| |  | || || |||||||||||||    
T  47778050 tgtccaaacaaaaaggaagcaattggttggtacgaggatgaaaaatgcatgttgcgttactcagaccgttcaatatttagcctcaatgaaattggacctg 47778149  T
Q  208 cttattttgcatgga 222  Q
    | |||||||||||||    
T  47778150 catattttgcatgga 47778164  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 119 - 216
Target Start/End: Original strand, 6521743 - 6521840
Alignment:
Q  119 aaaagaagcaattggatggtacgaggatgagaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctgcttattttg 216  Q
    |||||||||||||||||||||| | |||||  |||| ||||| ||||| ||| ||||||||||| | ||||| |||||||||||||||||||||||||    
T  6521743 aaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgttactcaaaccgttcaatatttggtctcaacgaaattggacctgcttattttg 6521840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 409
Target Start/End: Original strand, 47782228 - 47782286
Alignment:
Q  351 agtagtgatcaaacaatatatggtcttgttcagtgtactcctgacttgtctggtccaca 409  Q
    ||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47782228 agtagtggtgaaacaatatatggtcttgttcagtgtacacctgacttgtctggtccaca 47782286  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 6523734 - 6523804
Alignment:
Q  108 tgtccaaacaaaaaagaagcaattggatggtacgaggatgagaaatgtatgttacgttattcagaccgttc 178  Q
    ||||||||| |||||||||||||||| ||||| || ||||| ||||| ||||| |||||||||||||||||    
T  6523734 tgtccaaaccaaaaagaagcaattggttggtatgaagatgaaaaatgcatgttgcgttattcagaccgttc 6523804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 6506992 - 6506903
Alignment:
Q  119 aaaagaagcaattggatggtacgaggatgagaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctgc 208  Q
    |||||||||||||||||||||||| ||||| ||||| ||||| ||||  ||| |||||| |||| | ||| | || ||||| ||||||||    
T  6506992 aaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc 6506903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 409
Target Start/End: Original strand, 47778303 - 47778351
Alignment:
Q  361 aaacaatatatggtcttgttcagtgtactcctgacttgtctggtccaca 409  Q
    |||| ||||||||||||| ||||||||| ||||| || |||||||||||    
T  47778303 aaactatatatggtcttgctcagtgtacacctgatttatctggtccaca 47778351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 1017 - 928
Alignment:
Q  119 aaaagaagcaattggatggtacgaggatgagaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctgc 208  Q
    |||||||||||||||||||||||| ||||| ||||| ||||| ||||  ||| |||||| |||| | ||| | || ||||| ||||||||    
T  1017 aaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc 928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 8670 - 8581
Alignment:
Q  119 aaaagaagcaattggatggtacgaggatgagaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctgc 208  Q
    |||||||||||||||||||||||| ||||| ||||| ||||| ||||  ||| |||||| |||| | ||| | || ||||| ||||||||    
T  8670 aaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc 8581  T

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