View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7650_high_8 (Length: 365)
Name: NF7650_high_8
Description: NF7650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7650_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 12508179 - 12508542
Alignment:
| Q |
1 |
ccatcagaatctaaccctagattctgaaatccaaaccattcagagctacaatcagaaaccctagaagggtcaccatcattagagggaacaatgatactag |
100 |
Q |
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| T |
12508179 |
ccatcagaatctaaccctagattctgaaatccaaaccattcagagctacaatcagaaaccctagaagggtcaccatcattagagggaacaatgatactag |
12508278 |
T |
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| Q |
101 |
gctgcacaactttctcaatgttcttcatatccaaagcagatatttgattgtaattatgattcctacgattgaatatgctagcaaaagtaaaatgatcact |
200 |
Q |
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| T |
12508279 |
gctgcacaactttctctatgttcttcatatccaaagcagatatttgattgtaattatgattcctacggttgaatatgctagcaaaagtaaaatgatcact |
12508378 |
T |
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| Q |
201 |
cactctactctttgaaaacttgttgttatgatgatcacttgttcttgccataatactttgaatattcttgctcaattttgctttcaatgaagcaaaagtt |
300 |
Q |
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| T |
12508379 |
cactctactctttgaaaacttgttgttattatgatcacttgttcttgccataatactttgaagattcttgctcaattttgctttcaatgaagcaaaagtt |
12508478 |
T |
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| Q |
301 |
aaactgttttttgcttcatttgtttgtggtgatgatactaatccttgatcatcactgcatggtg |
364 |
Q |
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| T |
12508479 |
aaactgttttttgcttcatttgtttgtggtgatgatactaatccttgatcatcactgcatggtg |
12508542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 21279541 - 21279607
Alignment:
| Q |
1 |
ccatcagaatctaaccctagattctgaaatccaaaccattcagagctacaatcagaaaccctagaag |
67 |
Q |
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| T |
21279541 |
ccatcataatctaaccctttattatgatatccaaaccattcagaactacaatcagaaacactagaag |
21279607 |
T |
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