View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7650_low_10 (Length: 323)
Name: NF7650_low_10
Description: NF7650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7650_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 42548351 - 42548072
Alignment:
| Q |
1 |
gagaaagaggtacgaaactgtaagaaggagaagaaaatgagtttactgatgaacagggtggttgagtcttccttcttcatcatctaatctataagtcatc |
100 |
Q |
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| T |
42548351 |
gagaaagaggtgagaaactgtaagaaggagaagaaaatgagtttactgatgaacagggtggttgaatcttccttcttcatcgtctaatctataagtcatc |
42548252 |
T |
|
| Q |
101 |
aattcactccactaaatgcaatttaatctaaacaaaacagataacaaaacacatctaagtttaattaattagaactagatactatccacacacac--caa |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
42548251 |
aattcactccactaaatgcaatttaatctaaacaaaaca------------catctaagtttaattaattagaattagatactatccacacacacaccaa |
42548164 |
T |
|
| Q |
199 |
cgataaatgagaataaaaggaagagaactcaaatatgctattgtgatatgtgaattaacacaatgatactgttaagaaaggaggagttgtta |
290 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42548163 |
cgataaatgagaataaaaggaagagaactcaactatgctattgtgatatgtgaattaacacaatgatactgttaagagaggaggagttgtta |
42548072 |
T |
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