View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7650_low_11 (Length: 302)

Name: NF7650_low_11
Description: NF7650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7650_low_11
NF7650_low_11
[»] chr2 (4 HSPs)
chr2 (6-294)||(4113314-4113614)
chr2 (53-294)||(29753993-29754231)
chr2 (58-208)||(4915842-4915989)
chr2 (53-112)||(43525488-43525547)
[»] chr7 (1 HSPs)
chr7 (52-282)||(3776442-3776673)
[»] chr4 (1 HSPs)
chr4 (53-208)||(49420621-49420773)
[»] chr5 (2 HSPs)
chr5 (55-115)||(1663121-1663181)
chr5 (50-112)||(14009732-14009794)
[»] chr8 (1 HSPs)
chr8 (53-112)||(12868228-12868287)
[»] chr1 (1 HSPs)
chr1 (56-155)||(20256281-20256377)
[»] chr6 (1 HSPs)
chr6 (52-88)||(26717276-26717312)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 294
Target Start/End: Complemental strand, 4113614 - 4113314
Alignment:
Q  6 tggaggagaaatgtgtatacaagtatattagcactccaacgcttaagcagtggcggagccaggaaatatatc-----tgggatgggccaacaaaattaac 100  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||     |||| ||||||||||||||||||    
T  4113614 tggaggagaaatgtgtctacaagcatattagcactccaacgcttaagcagcggcggagccaggaaatatatcatatctggggtgggccaacaaaattaac 4113515  T
Q  101 tctaatatataataaacatgaaatttatgttgtaataaacgttgaacacaaaattgttcaatcaagaagtaaatgttattcatgtcaattacaaccaaac 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||| | ||||||||||||    
T  4113514 tttaatatataataaacatgaaatttatgttgtaataaacgttgagcacaaaattgttcaatcaaaaagtaaattttattcatgttagttacaaccaaac 4113415  T
Q  201 atgatcttagtttcttg-------aggtgtagaagttaccaattcttcaattcttaaaactttaacaggttgtgatgtataagatattctttgttcttct 293  Q
    |||||||||||||||||       ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4113414 atgatcttagtttcttgaggtttgaggtgtagaagttaccatttcttcaattcttaaaactttaacaggttgtgatgtataagatattctttgttcatct 4113315  T
Q  294 c 294  Q
    |    
T  4113314 c 4113314  T

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Target: chr2; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 53 - 294
Target Start/End: Complemental strand, 29754231 - 29753993
Alignment:
Q  53 cagtggcggagccaggaaatatatctgggatgggccaacaaaattaactctaatatataataaacatgaaatttatgttgtaataaacgttgaacacaaa 152  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  29754231 cagtggcggagccaggaaatatatctggggtgggccaacaaaattaactctaatatataataaacatgaaatttatgttgtaataaacgttaagcacaaa 29754132  T
Q  153 attgttcaatcaagaagtaaatgttattcatgtcaattacaaccaaacatgatcttagtttcttgaggtgtagaagttaccaattcttcaattcttaaaa 252  Q
     |||||||||||| |||||||| | |||||| | | |||||||||||| ||||||||||| |||||||||||||||||||||   |||| |||||| |||    
T  29754131 gttgttcaatcaaaaagtaaatttgattcatcttagttacaaccaaacgtgatcttagttccttgaggtgtagaagttacca---cttctattcttgaaa 29754035  T
Q  253 ctttaacaggttgtgatgtataagatattctttgttcttctc 294  Q
    |||||||| |||  ||| |||||||||||| |||||| ||||    
T  29754034 ctttaacatgttaagatatataagatattccttgttcatctc 29753993  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 58 - 208
Target Start/End: Complemental strand, 4915989 - 4915842
Alignment:
Q  58 gcggagccaggaaatatatctgggatgggccaacaaaattaactctaatatataataaacatgaaatttatgttgtaataaacgttgaacacaaaattgt 157  Q
    |||||||||| |||||| ||||| |||||| |||||||||||||||||||||  |||||||| ||||||||||||||||||||||| | |||||| ||||    
T  4915989 gcggagccagaaaatatctctgg-atgggctaacaaaattaactctaatata--ataaacataaaatttatgttgtaataaacgttaagcacaaagttgt 4915893  T
Q  158 tcaatcaagaagtaaatgttattcatgtcaattacaaccaaacatgatctt 208  Q
    ||||||   |||||||| |||||| | | ||||||||||||||| ||||||    
T  4915892 tcaatcgtaaagtaaattttattcctcttaattacaaccaaacacgatctt 4915842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 43525547 - 43525488
Alignment:
Q  53 cagtggcggagccaggaaatatatctgggatgggccaacaaaattaactctaatatataa 112  Q
    |||||||||||| || ||| ||||| ||| ||||||||||||||  ||||||||||||||    
T  43525547 cagtggcggagctagaaaaaatatcgggggtgggccaacaaaatatactctaatatataa 43525488  T

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Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 52 - 282
Target Start/End: Original strand, 3776442 - 3776673
Alignment:
Q  52 gcagtggcggagccaggaaatatatctgggatgggccaacaaaattaactctaatatataataaacatgaaatttatgttgtaataaacgttgaacacaa 151  Q
    |||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  3776442 gcagtgacggagccaggaaatatatctggggtggaccaacaaaattaactctaatatataataaacatgaaatttatgttgtaataaacgttaagcacaa 3776541  T
Q  152 aattgttcaatcaagaagtaaatgttattcatgtcaattacaaccaa---acatg--atcttagtttcttgaggtgtagaagttaccaattcttcaattc 246  Q
    | ||||||||| ||||||||||| |||||||| | | ||||||||||   | |||  |||||||||||||||||||||||||||||||   |||| ||||    
T  3776542 agttgttcaattaagaagtaaattttattcatcttagttacaaccaaatcaaatgcaatcttagtttcttgaggtgtagaagttacca---cttctattc 3776638  T
Q  247 ttaaaactttaacaggttgtgatgtataagatattc 282  Q
    || ||||||||| |||||  ||||||||||||||||    
T  3776639 ttgaaactttaa-aggttaagatgtataagatattc 3776673  T

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Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 53 - 208
Target Start/End: Original strand, 49420621 - 49420773
Alignment:
Q  53 cagtggcggagccaggaaatatatctgggatgggccaacaaaattaactctaatatataataaacatgaaatttatgttgtaataaacgttgaacacaaa 152  Q
    ||||| ||||||||| ||||||||||||| |||||||||||| ||||||||||||||   ||||||| ||||||||||||||||||||||| | ||||||    
T  49420621 cagtgccggagccagaaaatatatctggggtgggccaacaaa-ttaactctaatatag--taaacataaaatttatgttgtaataaacgttaagcacaaa 49420717  T
Q  153 attgttcaatcaagaagtaaatgttattcatgtcaattacaaccaaacatgatctt 208  Q
     ||||||||||| ||||||||| |||||| | | | ||||||||||||| ||||||    
T  49420718 gttgttcaatcatgaagtaaattttattcctcttagttacaaccaaacacgatctt 49420773  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 1663121 - 1663181
Alignment:
Q  55 gtggcggagccaggaaatatatctgggatgggccaacaaaattaactctaatatataataa 115  Q
    |||||||||||  ||||||||||| || |||||||||||||||||||||||||||||||||    
T  1663121 gtggcggagccttgaaatatatctcgggtgggccaacaaaattaactctaatatataataa 1663181  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 14009794 - 14009732
Alignment:
Q  50 aagcagtggcggagccaggaaatatatctgggatgggccaacaaaattaactctaatatataa 112  Q
    ||||||||||||||| || ||| ||||| ||| ||||||||||||||  ||||||||||||||    
T  14009794 aagcagtggcggagctagaaaaaatatcgggggtgggccaacaaaatatactctaatatataa 14009732  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 12868228 - 12868287
Alignment:
Q  53 cagtggcggagccaggaaatatatctgggatgggccaacaaaattaactctaatatataa 112  Q
    |||||||||||| || ||| ||||| ||| ||||||||||||||  ||||||||||||||    
T  12868228 cagtggcggagctagaaaaaatatcgggggtgggccaacaaaatatactctaatatataa 12868287  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 20256281 - 20256377
Alignment:
Q  56 tggcggagccaggaaatatatctgggatgggccaacaaaattaactctaatatataataaacatgaaatttatgttgtaataaacgttgaacacaaaatt 155  Q
    ||||||||| |||||| |||| | || || ||||  ||||| |||||||||||||||   |||| || ||| |||||||||||||| | |||||||||||    
T  20256281 tggcggagctaggaaaaatattttgggtgtgccagtaaaataaactctaatatataa---acataaattttttgttgtaataaacgctaaacacaaaatt 20256377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 26717276 - 26717312
Alignment:
Q  52 gcagtggcggagccaggaaatatatctgggatgggcc 88  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  26717276 gcagtggcggagccaggaaataaatctggggtgggcc 26717312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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