View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7650_low_14 (Length: 288)
Name: NF7650_low_14
Description: NF7650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7650_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 15 - 272
Target Start/End: Original strand, 52390964 - 52391222
Alignment:
| Q |
15 |
aatattaacggctggcatatccactattaaatgtaagaaaggcgtgtattatatagaaaagaatgttgtagcttgctgataattgacatgatagacacac |
114 |
Q |
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| T |
52390964 |
aatattaacggctggcatatccactattaaatgtaagaaaggcgtgtattatatagaaaagaatgttgtagcttgctgataattgacatgatagacacac |
52391063 |
T |
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| Q |
115 |
taccaaatttannnnnnngacatgatagatggtataatgccttnnnnnnnnnggtggtatgctattgaatata--ttgttggtcattaggaatgaaaaca |
212 |
Q |
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| T |
52391064 |
taccaaa-aaaaaaatttgacatgatagatggtataatgccttaaaaaaaaaggtggtatgctattgaatagaatatattggtcattaggaatgaaaaca |
52391162 |
T |
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| Q |
213 |
agggaggagaataaatataattgttgacagaaagaggtagtagaaaataatcatcatatt |
272 |
Q |
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| T |
52391163 |
agggaggagaataaatataattgttgacagaaagaggtagtagaaaataatcatcatatt |
52391222 |
T |
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