View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7650_low_18 (Length: 254)

Name: NF7650_low_18
Description: NF7650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7650_low_18
NF7650_low_18
[»] chr4 (11 HSPs)
chr4 (89-180)||(5183608-5183699)
chr4 (89-193)||(5197007-5197112)
chr4 (89-180)||(5174266-5174357)
chr4 (89-193)||(4841151-4841256)
chr4 (89-180)||(5161325-5161416)
chr4 (89-180)||(5215152-5215243)
chr4 (89-180)||(4855671-4855762)
chr4 (198-238)||(667924-667964)
chr4 (205-242)||(13567967-13568004)
chr4 (197-242)||(40976843-40976888)
chr4 (198-240)||(8847785-8847828)
[»] chr7 (7 HSPs)
chr7 (196-242)||(5222281-5222327)
chr7 (197-242)||(43364177-43364222)
chr7 (205-242)||(9701728-9701765)
chr7 (198-241)||(27950848-27950892)
chr7 (196-227)||(27954008-27954039)
chr7 (198-240)||(29865181-29865224)
chr7 (197-227)||(48455364-48455394)
[»] chr3 (7 HSPs)
chr3 (198-243)||(20628599-20628644)
chr3 (198-240)||(4501048-4501090)
chr3 (196-242)||(4506372-4506418)
chr3 (198-240)||(4644574-4644616)
chr3 (196-228)||(8049788-8049820)
chr3 (198-238)||(9331391-9331431)
chr3 (198-240)||(27900457-27900499)
[»] chr5 (6 HSPs)
chr5 (198-242)||(42729060-42729104)
chr5 (198-240)||(3413542-3413584)
chr5 (198-240)||(4694463-4694505)
chr5 (198-240)||(12919202-12919244)
chr5 (198-242)||(519696-519741)
chr5 (205-242)||(9335396-9335433)
[»] chr6 (3 HSPs)
chr6 (198-240)||(13105134-13105176)
chr6 (198-238)||(18765618-18765658)
chr6 (198-238)||(1051150-1051191)
[»] chr1 (5 HSPs)
chr1 (196-242)||(9315889-9315935)
chr1 (198-242)||(19329304-19329348)
chr1 (198-242)||(21814748-21814792)
chr1 (197-239)||(45620397-45620439)
chr1 (198-240)||(47293951-47293993)
[»] scaffold0012 (1 HSPs)
scaffold0012 (197-242)||(202330-202375)
[»] chr8 (7 HSPs)
chr8 (195-235)||(38657171-38657211)
chr8 (200-238)||(2268603-2268641)
chr8 (198-240)||(9907157-9907199)
chr8 (198-242)||(5064246-5064290)
chr8 (198-242)||(44246155-44246199)
chr8 (198-227)||(4435096-4435125)
chr8 (196-240)||(21693184-21693229)
[»] chr2 (1 HSPs)
chr2 (196-240)||(22599896-22599940)
[»] scaffold0265 (1 HSPs)
scaffold0265 (198-242)||(18017-18061)


Alignment Details
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 5183608 - 5183699
Alignment:
Q  89 gattggatttatcatgcaacaagctaacaggtatcatcccttctcaaattggagacctgcaacaaattaaagccttgaatctatcacataat 180  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5183608 gattggatttatcatgcaataagctaacaggtgtcatcccttctcaaattggagacctacaacaaattaaagccttgaatctatcacataat 5183699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 5197007 - 5197112
Alignment:
Q  89 gattggatttatcatgcaacaagctaacaggtatcatcccttctcaaattggagacctgcaacaaattaaagccttgaatctatcacataat-aattgtc 187  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| | |||||    
T  5197007 gattggatttatcatgcaataagctaacaggtgtcatcccttctcaaattggagacctacaacaaattagagccttgaatctatcacataatcacttgtc 5197106  T
Q  188 aggtcc 193  Q
    ||||||    
T  5197107 aggtcc 5197112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 5174266 - 5174357
Alignment:
Q  89 gattggatttatcatgcaacaagctaacaggtatcatcccttctcaaattggagacctgcaacaaattaaagccttgaatctatcacataat 180  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  5174266 gattggatttatcatgcaataagctaacaggtgtcatcccttctcaaattggagacctacaacaaattagagccttgaatctatcacataat 5174357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 89 - 193
Target Start/End: Complemental strand, 4841256 - 4841151
Alignment:
Q  89 gattggatttatcatgcaacaagctaacaggtatcatcccttctcaaattggagacctgcaacaaattaaagccttgaatctatcacataat-aattgtc 187  Q
    ||||||||||||||||||| ||  |||||||| | |||||||| |||||||||||||| |||||||||| |||||||||||||||||||||| | |||||    
T  4841256 gattggatttatcatgcaataatttaacaggtgttatcccttcccaaattggagacctacaacaaattagagccttgaatctatcacataatcacttgtc 4841157  T
Q  188 aggtcc 193  Q
    ||||||    
T  4841156 aggtcc 4841151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 5161325 - 5161416
Alignment:
Q  89 gattggatttatcatgcaacaagctaacaggtatcatcccttctcaaattggagacctgcaacaaattaaagccttgaatctatcacataat 180  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||  ||||||||||| ||  ||||||||| ||||||||||||    
T  5161325 gattggatttatcatgcaacaagctaacaggtactatcccttctcaaattgggcacctgcaacaagttttagccttgaacctatcacataat 5161416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 5215152 - 5215243
Alignment:
Q  89 gattggatttatcatgcaacaagctaacaggtatcatcccttctcaaattggagacctgcaacaaattaaagccttgaatctatcacataat 180  Q
    |||||||||||||||| || || ||||||||| |||||||||||||||||||  |||| |||||| ||| ||||||||| ||||||||||||    
T  5215152 gattggatttatcatggaataacctaacaggtctcatcccttctcaaattggtcaccttcaacaagttagagccttgaacctatcacataat 5215243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 180
Target Start/End: Complemental strand, 4855762 - 4855671
Alignment:
Q  89 gattggatttatcatgcaacaagctaacaggtatcatcccttctcaaattggagacctgcaacaaattaaagccttgaatctatcacataat 180  Q
    |||||||||||||||| || || ||||||||| |||||||||||||||||||  |||| |||| | ||| ||||||||| ||||||||||||    
T  4855762 gattggatttatcatggaataacctaacaggtgtcatcccttctcaaattggtcaccttcaaccagttagagccttgaacctatcacataat 4855671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 667964 - 667924
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgttattgtctcca 238  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  667964 tgatgtagtatcaaaagtaagtatttttgttattgtctcca 667924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 13567967 - 13568004
Alignment:
Q  205 gtatcaaaagtaagtatttttgttattgtctccacagg 242  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  13567967 gtatcaaaagtaagtatttttgttattatctccacagg 13568004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 40976888 - 40976843
Alignment:
Q  197 ttgatgtagtatcaaaagtaagtatttttgttattgtctccacagg 242  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||||    
T  40976888 ttgatgtagtatcaaaagtaagtatttatgttatcttctccacagg 40976843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 8847785 - 8847828
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgt-tattgtctccaca 240  Q
    |||||||||||||||||||||||||||||| ||| |||||||||    
T  8847785 tgatgtagtatcaaaagtaagtatttttgtgtatcgtctccaca 8847828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 5222281 - 5222327
Alignment:
Q  196 tttgatgtagtatcaaaagtaagtatttttgttattgtctccacagg 242  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  5222281 tttgatgtagtatcaaaagtaagtatttttgttatcgtctccacagg 5222327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 43364177 - 43364222
Alignment:
Q  197 ttgatgtagtatcaaaagtaagtatttttgttattgtctccacagg 242  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||    
T  43364177 ttgatgtagtatcaaaagtaagtatttatgttatcgtctccacagg 43364222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 9701728 - 9701765
Alignment:
Q  205 gtatcaaaagtaagtatttttgttattgtctccacagg 242  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  9701728 gtatcaaaagtaagtatttttgttattatctccacagg 9701765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 27950848 - 27950892
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgt-tattgtctccacag 241  Q
    |||||||||||||||||||||||||||||| |||||| |||||||    
T  27950848 tgatgtagtatcaaaagtaagtatttttgtgtattgtttccacag 27950892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 227
Target Start/End: Original strand, 27954008 - 27954039
Alignment:
Q  196 tttgatgtagtatcaaaagtaagtatttttgt 227  Q
    ||||||||||||||||||||||||||||||||    
T  27954008 tttgatgtagtatcaaaagtaagtatttttgt 27954039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 29865224 - 29865181
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgt-tattgtctccaca 240  Q
    |||||||||||||||||||||||||||||| ||| |||||||||    
T  29865224 tgatgtagtatcaaaagtaagtatttttgtgtatcgtctccaca 29865181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 227
Target Start/End: Original strand, 48455364 - 48455394
Alignment:
Q  197 ttgatgtagtatcaaaagtaagtatttttgt 227  Q
    |||||||||||||||||||||||||||||||    
T  48455364 ttgatgtagtatcaaaagtaagtatttttgt 48455394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 20628644 - 20628599
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgttattgtctccacaggt 243  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  20628644 tgatgtagtatcaaaagtaagtatttttgttatcgtctccacaggt 20628599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 4501048 - 4501090
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgttattgtctccaca 240  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  4501048 tgatgtagtatcaaaagtaagtatttttgttatcgtctccaca 4501090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 4506372 - 4506418
Alignment:
Q  196 tttgatgtagtatcaaaagtaagtatttttgttattgtctccacagg 242  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||    
T  4506372 tttgatgtagtatcaaaagtaagtatttttgttatcatctccacagg 4506418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 4644616 - 4644574
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgttattgtctccaca 240  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  4644616 tgatgtagtatcaaaagtaagtatttttgttatcgtctccaca 4644574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 8049788 - 8049820
Alignment:
Q  196 tttgatgtagtatcaaaagtaagtatttttgtt 228  Q
    |||||||||||||||||||||||||||||||||    
T  8049788 tttgatgtagtatcaaaagtaagtatttttgtt 8049820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 9331431 - 9331391
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgttattgtctcca 238  Q
    |||||||||||||||||||||||||||||| || |||||||    
T  9331431 tgatgtagtatcaaaagtaagtatttttgtcatcgtctcca 9331391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 27900457 - 27900499
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgttattgtctccaca 240  Q
    |||||||||||||||||||||||||| |||||| || ||||||    
T  27900457 tgatgtagtatcaaaagtaagtatttatgttatcgtttccaca 27900499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 42729060 - 42729104
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgttattgtctccacagg 242  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  42729060 tgatgtagtatcaaaagtaagtatttttgttatcgtctccacagg 42729104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 3413584 - 3413542
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgttattgtctccaca 240  Q
    |||||||||||||||||||||||||||||| || |||||||||    
T  3413584 tgatgtagtatcaaaagtaagtatttttgtcatcgtctccaca 3413542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 4694505 - 4694463
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgttattgtctccaca 240  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  4694505 tgatgtagtatcaaaagtaagtatttttgttatcgtcttcaca 4694463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 12919244 - 12919202
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgttattgtctccaca 240  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  12919244 tgatgtagtatcaaaagtaagtattttcgttatcgtctccaca 12919202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 519741 - 519696
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgt-tattgtctccacagg 242  Q
    ||||||||||| |||||||||||||||||| ||| |||||||||||    
T  519741 tgatgtagtattaaaagtaagtatttttgtgtatagtctccacagg 519696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 9335433 - 9335396
Alignment:
Q  205 gtatcaaaagtaagtatttttgttattgtctccacagg 242  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  9335433 gtatcaaaagtaagtatttatgttatcgtctccacagg 9335396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 13105134 - 13105176
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgttattgtctccaca 240  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  13105134 tgatgtagtatcaaaagtaagtatttttgttatcgtctccaca 13105176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 18765618 - 18765658
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgttattgtctcca 238  Q
    |||||||||||||||||||||||||| |||||| |||||||    
T  18765618 tgatgtagtatcaaaagtaagtatttctgttatcgtctcca 18765658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 1051150 - 1051191
Alignment:
Q  198 tgatgtagtatcaaaagtaagta-tttttgttattgtctcca 238  Q
    ||||||||||||||||||||||| |||||||||| |||||||    
T  1051150 tgatgtagtatcaaaagtaagtattttttgttatcgtctcca 1051191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 9315889 - 9315935
Alignment:
Q  196 tttgatgtagtatcaaaagtaagtatttttgttattgtctccacagg 242  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||    
T  9315889 tttgatgtagtatcaaaagtaagtatttatgttatcgtctccacagg 9315935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 19329304 - 19329348
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgttattgtctccacagg 242  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||    
T  19329304 tgatgtagtatcaaaagtaagtatttttgctatcgtctccacagg 19329348  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 21814748 - 21814792
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgttattgtctccacagg 242  Q
    |||||||||||||||||||||| |||| ||||| |||||||||||    
T  21814748 tgatgtagtatcaaaagtaagttttttagttatcgtctccacagg 21814792  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 45620439 - 45620397
Alignment:
Q  197 ttgatgtagtatcaaaagtaagtatttttgttattgtctccac 239  Q
    |||||||||||| |||||||||||||||||||||  |||||||    
T  45620439 ttgatgtagtattaaaagtaagtatttttgttatcatctccac 45620397  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 47293951 - 47293993
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgttattgtctccaca 240  Q
    ||||||||||| |||||||| |||||||||||| |||||||||    
T  47293951 tgatgtagtattaaaagtaaatatttttgttatcgtctccaca 47293993  T

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Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 202330 - 202375
Alignment:
Q  197 ttgatgtagtatcaaaagtaagtatttttgttattgtctccacagg 242  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||    
T  202330 ttgatgtagtatcaaaagtaagtatttatgttatcgtctccacagg 202375  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 38657171 - 38657211
Alignment:
Q  195 atttgatgtagtatcaaaagtaagtatttttgttattgtct 235  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  38657171 atttgatgtagtattaaaagtaagtatttttgttattgtct 38657211  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 2268641 - 2268603
Alignment:
Q  200 atgtagtatcaaaagtaagtatttttgttattgtctcca 238  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  2268641 atgtagtatcaaaagtaagtatttttgttatcgtctcca 2268603  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 9907199 - 9907157
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgttattgtctccaca 240  Q
    |||||| |||||||||||||||||||||||||| |||||||||    
T  9907199 tgatgttgtatcaaaagtaagtatttttgttatcgtctccaca 9907157  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 5064290 - 5064246
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgttattgtctccacagg 242  Q
    ||||||| ||||||||||||||||||||||||| |||| ||||||    
T  5064290 tgatgtaatatcaaaagtaagtatttttgttatcgtcttcacagg 5064246  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 44246199 - 44246155
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgttattgtctccacagg 242  Q
    |||| ||||||||||||||||||||| |||||| |||||||||||    
T  44246199 tgatatagtatcaaaagtaagtatttatgttatcgtctccacagg 44246155  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 227
Target Start/End: Original strand, 4435096 - 4435125
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgt 227  Q
    ||||||||||||||||||||||||||||||    
T  4435096 tgatgtagtatcaaaagtaagtatttttgt 4435125  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 21693229 - 21693184
Alignment:
Q  196 tttgatgtagtatcaaaagtaagtatttttgt-tattgtctccaca 240  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||    
T  21693229 tttgatgtaatatcaaaagtaagtatttttgtgtatcgtctccaca 21693184  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 22599896 - 22599940
Alignment:
Q  196 tttgatgtagtatcaaaagtaagtatttttgttattgtctccaca 240  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||    
T  22599896 tttgatgtattatcaaaagtaagtatttttgttatcgtctccaca 22599940  T

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Target: scaffold0265 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 18061 - 18017
Alignment:
Q  198 tgatgtagtatcaaaagtaagtatttttgttattgtctccacagg 242  Q
    |||||||||||||||||||||| |||| ||||| |||||||||||    
T  18061 tgatgtagtatcaaaagtaagttttttagttatcgtctccacagg 18017  T

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