View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7650_low_19 (Length: 250)
Name: NF7650_low_19
Description: NF7650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7650_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 47221125 - 47221251
Alignment:
| Q |
1 |
ctgcatgtgctgtttgtgcggcgttctttatcgtgatagagaagttcctggagtggcttgaaaagtgagttgacttaagtaaaggacaacagacagtatt |
100 |
Q |
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| T |
47221125 |
ctgcatgtgctgtttgtgcggcattctttatcgtgatagagaagttcctggagtggcttgaaaagtgagttgacttaagtaaaggacaacaaacagtatt |
47221224 |
T |
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| Q |
101 |
cgtggatcgggaagaccaactctcatt |
127 |
Q |
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| T |
47221225 |
cgtggatcgggaagaccaactctcatt |
47221251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 131 - 240
Target Start/End: Original strand, 47222157 - 47222266
Alignment:
| Q |
131 |
catttcacattttgttttttgagttcctccattttggagttattcagtccaataaaaagtaaataaattgacatgcaaagtgaggggaaactcttccttt |
230 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47222157 |
catttcacattgtgttttttgagttcctccattttggagtgtttcagtccaataaaaagtaaataaattgacatgcaaagtgaggggaaactcttccttt |
47222256 |
T |
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| Q |
231 |
tccttctctg |
240 |
Q |
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|||||||||| |
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| T |
47222257 |
tccttctctg |
47222266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 35330328 - 35330278
Alignment:
| Q |
77 |
aagtaaaggacaacagacagtattcgtggatcgggaagaccaactctcatt |
127 |
Q |
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| T |
35330328 |
aagtaaaggacaacagacagtattcgtggatcgggaagaccaactctcatt |
35330278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 44968560 - 44968510
Alignment:
| Q |
77 |
aagtaaaggacaacagacagtattcgtggatcgggaagaccaactctcatt |
127 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
44968560 |
aagtaaaggacaacaaatagtattcgtggatcgggaagaccaactctcatt |
44968510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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