View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7650_low_2 (Length: 503)

Name: NF7650_low_2
Description: NF7650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7650_low_2
NF7650_low_2
[»] chr7 (7 HSPs)
chr7 (1-485)||(43751023-43751498)
chr7 (265-318)||(19679294-19679347)
chr7 (265-302)||(7181402-7181439)
chr7 (190-237)||(20513485-20513533)
chr7 (265-305)||(28437472-28437512)
chr7 (265-305)||(33810142-33810182)
chr7 (265-305)||(43778505-43778545)
[»] chr3 (7 HSPs)
chr3 (265-318)||(51936232-51936285)
chr3 (265-305)||(17642700-17642740)
chr3 (265-305)||(25428779-25428819)
chr3 (265-305)||(30697482-30697522)
chr3 (265-305)||(36796535-36796575)
chr3 (265-305)||(46312350-46312390)
chr3 (265-305)||(49304319-49304359)
[»] chr4 (5 HSPs)
chr4 (265-307)||(16878808-16878850)
chr4 (257-307)||(26593340-26593390)
chr4 (264-305)||(27485192-27485233)
chr4 (267-304)||(34713065-34713102)
chr4 (265-305)||(53013698-53013738)
[»] chr1 (8 HSPs)
chr1 (267-305)||(35619446-35619484)
chr1 (264-305)||(2925864-2925905)
chr1 (265-305)||(2175445-2175485)
chr1 (265-305)||(14153222-14153262)
chr1 (265-305)||(17675307-17675347)
chr1 (265-305)||(42161983-42162023)
chr1 (265-301)||(49547096-49547132)
chr1 (265-305)||(51246504-51246544)
[»] chr8 (2 HSPs)
chr8 (265-306)||(32533290-32533331)
chr8 (265-305)||(40985004-40985044)
[»] chr5 (2 HSPs)
chr5 (265-302)||(1175876-1175913)
chr5 (265-305)||(2021091-2021131)
[»] chr2 (5 HSPs)
chr2 (265-306)||(29880874-29880915)
chr2 (265-305)||(3022806-3022846)
chr2 (265-305)||(8555706-8555746)
chr2 (265-305)||(38216447-38216487)
chr2 (265-305)||(39913384-39913424)
[»] chr6 (5 HSPs)
chr6 (265-305)||(4465037-4465077)
chr6 (265-305)||(8439325-8439365)
chr6 (265-305)||(22817271-22817311)
chr6 (265-305)||(23095058-23095098)
chr6 (265-305)||(33939053-33939093)


Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 43751498 - 43751023
Alignment:
Q  1 atttgctttgatagcttattaagatgtgagagatcatcattcaaattaaagtgcatggagtcctattgctcaattagttaacggctataatacaatatct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||     ||||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  43751498 atttgctttgatagcttgttaagatgtgagagatcatcattcaaa-----gtgcatggattcctattgctctattagttaacggctataatacagtatct 43751404  T
Q  101 gttttctttaggatccaattgattatggcctccctatctctgatttgtctaagactttgttttgaagtttgaagaggaaggaagacaacgttttggaggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    ||||||||||||    
T  43751403 gttttctttaggatccaattgattatggcctccctatctctgatttgtctaagactttgttttgaagtttggagaggaaggaag----cgttttggaggg 43751308  T
Q  201 atacgattgaaggaaaaaatagagaaatttttcaaaaaattgagac-annnnnnnncttctaataaatgataaaagaatgtttatgattaatatactttt 299  Q
    ||||||||| || |||||||||||||||||||||||||||||||||          |||||||| |||||||||||||||||||||||||||||||||||    
T  43751307 atacgattggagaaaaaaatagagaaatttttcaaaaaattgagactttttttttccttctaatgaatgataaaagaatgtttatgattaatatactttt 43751208  T
Q  300 aattttgcttgtattataaggagaattttgtattccaaagagaactaagcccatcaaactctcctcctaaaattctctattcttttctttccatttattt 399  Q
    | ||||| ||||||||||||||||||| |||||||| |||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||    
T  43751207 agttttgtttgtattataaggagaattctgtattccgaagaaaactaagtccatcaaactctcctcctaaaattatatattcttttctttccatttattt 43751108  T
Q  400 cttccnnnnnnnatcaaactctctcttcccctccgctctaagctctcaattagagtctaaaaatacaattaaaccctaagccattt 485  Q
    ||| |        ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43751107 ctttcttttttt-tcaaactctctcttcccctccgctctaagctctcaattagagtttaaaaatacaattaaaccctaagccattt 43751023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 318
Target Start/End: Complemental strand, 19679347 - 19679294
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaattttgcttgtattataa 318  Q
    ||||||||||||||  ||||||||||| |||||||||||||||  |||||||||    
T  19679347 aatgataaaagaatacttatgattaatgtacttttaattttgcgagtattataa 19679294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 7181402 - 7181439
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaat 302  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  7181402 aatgataaaagaatgcttatgattaatatatttttaat 7181439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 20513533 - 20513485
Alignment:
Q  190 gttttggagggatacgatt-gaaggaaaaaatagagaaatttttcaaaa 237  Q
    |||||||||||||  |||| |||||||||||||||||||| ||||||||    
T  20513533 gttttggagggatgagattagaaggaaaaaatagagaaatctttcaaaa 20513485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 28437472 - 28437512
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  28437472 aatgataaactaatatttatgattaatatacttttaatttt 28437512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 33810142 - 33810182
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  33810142 aatgataaactaatatttatgattaatatacttttaatttt 33810182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 43778505 - 43778545
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  43778505 aatgataaactaatatttatgattaatatacttttaatttt 43778545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 51936232 - 51936285
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaattttgcttgtattataa 318  Q
    |||||||||||||| |||| ||||||| |||||||||||||||  |||||||||    
T  51936232 aatgataaaagaatatttaggattaatgtacttttaattttgcaagtattataa 51936285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 17642740 - 17642700
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  17642740 aatgataaactaatatttatgattaatatacttttaatttt 17642700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 25428819 - 25428779
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||| |||  |||||||||||||||||||||||||    
T  25428819 aatgataaaataatacttatgattaatatacttttaatttt 25428779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 30697522 - 30697482
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||||||||||||||||||| ||||||||||    
T  30697522 aatgataaactaatgtttatgattaatatatttttaatttt 30697482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 36796575 - 36796535
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  36796575 aatgataaactaatatttatgattaatatacttttaatttt 36796535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 46312350 - 46312390
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  46312350 aatgataaactaatatttatgattaatatacttttaatttt 46312390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 49304359 - 49304319
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||||||||||||||||||| ||||||||||    
T  49304359 aatgataaattaatgtttatgattaatatatttttaatttt 49304319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 16878850 - 16878808
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaattttgc 307  Q
    ||||||||||||||  |||||||||||||| ||||||||||||    
T  16878850 aatgataaaagaatacttatgattaatatatttttaattttgc 16878808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 26593340 - 26593390
Alignment:
Q  257 ttctaataaatgataaaagaatgtttatgattaatatacttttaattttgc 307  Q
    ||||| ||||||||||||||||  || | ||||||||||||||||||||||    
T  26593340 ttctagtaaatgataaaagaatacttttaattaatatacttttaattttgc 26593390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 27485192 - 27485233
Alignment:
Q  264 aaatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||| ||||| |||||||||||||| ||||||||||    
T  27485192 aaatgataaatgaatgcttatgattaatatatttttaatttt 27485233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 34713102 - 34713065
Alignment:
Q  267 tgataaaagaatgtttatgattaatatacttttaattt 304  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  34713102 tgataaatgaatgtttatgattaatatatttttaattt 34713065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 53013738 - 53013698
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||||||||||||||||||| ||||||||||    
T  53013738 aatgataaattaatgtttatgattaatatatttttaatttt 53013698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 35619446 - 35619484
Alignment:
Q  267 tgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  35619446 tgataaattaatgtttatgattaatatacttttaatttt 35619484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 2925864 - 2925905
Alignment:
Q  264 aaatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    ||||||||||| |||  |||||||||||||||||||||||||    
T  2925864 aaatgataaaataatacttatgattaatatacttttaatttt 2925905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 2175485 - 2175445
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  2175485 aatgataaactaatatttatgattaatatacttttaatttt 2175445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 14153262 - 14153222
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  14153262 aatgataaactaatatttatgattaatatacttttaatttt 14153222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 17675347 - 17675307
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  17675347 aatgataaactaatatttatgattaatatacttttaatttt 17675307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 42161983 - 42162023
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  42161983 aatgataaactaatatttatgattaatatacttttaatttt 42162023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 49547132 - 49547096
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaa 301  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  49547132 aatgataaatgaatgtttatcattaatatacttttaa 49547096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 51246504 - 51246544
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  51246504 aatgataaactaatctttatgattaatatacttttaatttt 51246544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 32533331 - 32533290
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaattttg 306  Q
    ||||| ||||||||| | ||||||||||||||||||||||||    
T  32533331 aatgagaaaagaatgctcatgattaatatacttttaattttg 32533290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 40985004 - 40985044
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||||||||||||||||||| ||||||||||    
T  40985004 aatgataaattaatgtttatgattaatatatttttaatttt 40985044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 1175876 - 1175913
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaat 302  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  1175876 aatgataaatgaatgtttatgattaatatatttttaat 1175913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 2021131 - 2021091
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  2021131 aatgataaattaatatttatgattaatatacttttaatttt 2021091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 29880915 - 29880874
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaattttg 306  Q
    ||||||||| ||||| |||||||||||||| |||||||||||    
T  29880915 aatgataaacgaatgcttatgattaatatatttttaattttg 29880874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 3022846 - 3022806
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||||||||||||||||||| ||||||||||    
T  3022846 aatgataaattaatgtttatgattaatatatttttaatttt 3022806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 8555706 - 8555746
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  8555706 aatgataaactaatatttatgattaatatacttttaatttt 8555746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 38216447 - 38216487
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    ||||||| | |||||||||||||||||||| ||||||||||    
T  38216447 aatgatagatgaatgtttatgattaatatatttttaatttt 38216487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 39913424 - 39913384
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||||||||||||||||||| ||||||||||    
T  39913424 aatgataaattaatgtttatgattaatatatttttaatttt 39913384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 4465077 - 4465037
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||||||||||||||||||| ||||||||||    
T  4465077 aatgataaattaatgtttatgattaatatatttttaatttt 4465037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 8439325 - 8439365
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||||||||||||||||||| ||||||||||    
T  8439325 aatgataaattaatgtttatgattaatatatttttaatttt 8439365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 22817271 - 22817311
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    ||||||||| ||||| |||||||||||||| ||||||||||    
T  22817271 aatgataaatgaatgcttatgattaatatatttttaatttt 22817311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 23095058 - 23095098
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||| |||  |||||||||||||||||||||||||    
T  23095058 aatgataaaataatacttatgattaatatacttttaatttt 23095098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 33939053 - 33939093
Alignment:
Q  265 aatgataaaagaatgtttatgattaatatacttttaatttt 305  Q
    |||||||||  ||||||||||||||||||| ||||||||||    
T  33939053 aatgataaattaatgtttatgattaatatatttttaatttt 33939093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University