View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7650_low_23 (Length: 205)
Name: NF7650_low_23
Description: NF7650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7650_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 6e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 5553439 - 5553268
Alignment:
| Q |
17 |
gaagaacgcggtaatcccgcaaggtgcccaaactgatgaagatgatcctgaaccccacttgggacgacgctgaagatgcctagccacctaaaaatcaaga |
116 |
Q |
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| T |
5553439 |
gaagaacgcggtaaccccgcaaggtgcccgaactgatgaagatgatcctgagccccacttggaacgacgctgaagatgtctagccacctaaaaaccaaga |
5553340 |
T |
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| Q |
117 |
accacacactccagaatgtgttgcagcgaaaaaacaagtttatatatacataaaagggtcgatgctatatct |
188 |
Q |
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| T |
5553339 |
accacacactgcagaatgtgttgcagcgaaaaaacaagtttatatatacataaaagggtcgatgctatatct |
5553268 |
T |
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Back To:
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Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 2959009 - 2959149
Alignment:
| Q |
13 |
gtgagaagaacgcggtaatcccgcaaggtgcccaaactgatgaagatgatcctgaaccccacttgggacgacgctgaagatgcctagccacctaaaaatc |
112 |
Q |
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| T |
2959009 |
gtgagaagaacacggtaaccacgcaaggtgcctgaactgatgcagatgatcctgagccaaacttgggatgacgcaggagatgccaagccacctaaaaacc |
2959108 |
T |
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| Q |
113 |
aagaaccacacactccagaatgtgttgcagcgaaaaaacaa |
153 |
Q |
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| T |
2959109 |
aagaaccaaacactacagaatgtgtagcagccaaaaaacaa |
2959149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 20366900 - 20367040
Alignment:
| Q |
13 |
gtgagaagaacgcggtaatcccgcaaggtgcccaaactgatgaagatgatcctgaaccccacttgggacgacgctgaagatgcctagccacctaaaaatc |
112 |
Q |
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|||||||||||||||||| | |||||||||||| |||| ||| |||||||| ||| || ||| |||| |||| | ||||||| ||||||||||||| | |
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| T |
20366900 |
gtgagaagaacgcggtaacctcgcaaggtgcccgaactaatgcagatgatcttgagccaaactgaggacaacgcaggagatgccaagccacctaaaaacc |
20366999 |
T |
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| Q |
113 |
aagaaccacacactccagaatgtgttgcagcgaaaaaacaa |
153 |
Q |
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| T |
20367000 |
aagaaccacacaccgcagaatgtgtcacagccaaaaaacaa |
20367040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 4971290 - 4971335
Alignment:
| Q |
18 |
aagaacgcggtaatcccgcaaggtgcccaaactgatgaagatgatc |
63 |
Q |
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| T |
4971290 |
aagaacgcggtaaccccgcaaggtgcccaaactgataaaaatgatc |
4971335 |
T |
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