View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7650_low_3 (Length: 435)
Name: NF7650_low_3
Description: NF7650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7650_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 12508153 - 12507733
Alignment:
| Q |
1 |
aatgctaatattaatgttggcgatcaaggttttttggaacaactcatggggtggattgatgatgatagttctgatatttgtgaaggttcaagtagtaaga |
100 |
Q |
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| T |
12508153 |
aatgctaatattaatgttggtgatcaaggttttttggaacaactcatggggtggattgatgatgatagttctgatatttgtgaaggttcaagtagtaaga |
12508054 |
T |
|
| Q |
101 |
ggtttaaggtatcttcttctgttcttgtgcctccaactttctctagttctccttatgattgtggttcaccttatagtggttatgcttctccatataatag |
200 |
Q |
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| T |
12508053 |
ggtttaaggtatcttcttctgttcttgtgcctccaactttctctagttctccttatgattgtggttcaccttatagtggttatgcttctccatataatag |
12507954 |
T |
|
| Q |
201 |
ttgtggatccccttgtaatggttatgcctctccttattatggtagcaagaagtaaaattgaaagaacatgaaattcgtgtttggattaacggtaagtcca |
300 |
Q |
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| T |
12507953 |
ttgtggatccccttgtaatggttatgcctctccttattatggtagcaagaagtaaaattggaagaacatgaaattcgtgtttggattaacggcaagtcca |
12507854 |
T |
|
| Q |
301 |
atggaatcacgatggatcactgtgattttggtagaaactaaactttggagaatg-nnnnnnnttatcatggtgtcaccgtgatttcgttgaaattctcct |
399 |
Q |
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| T |
12507853 |
atggaatcacgatggatcactctgattttggtagaaactaaactttggagaatgaaaaaaaattatcatggtgtcaccgtgatttcgttgaaattctcct |
12507754 |
T |
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| Q |
400 |
caatccaaacatgcatgtaat |
420 |
Q |
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| T |
12507753 |
caatccaaacatgcatgtaat |
12507733 |
T |
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Back To:
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Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 21279515 - 21279361
Alignment:
| Q |
1 |
aatgctaatattaatgttggcgatcaaggtttttt-ggaacaactcatggggtggattgatgatgatagttctgatatttgtgaaggttcaagtagtaag |
99 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21279515 |
aatgctaatattaatgttggtgatcaaggtttttttggaacaactcatgggatggattgatgat---agttctgatatttgtgaaggttcaagtagtaaa |
21279419 |
T |
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| Q |
100 |
aggtttaaggtatcttcttctgttcttgtgcctccaactttctctagttctccttatg |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21279418 |
aggtttaaggtatcttcttctgttcttgtgcctccaactttctctagttctccttatg |
21279361 |
T |
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