View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7650_low_4 (Length: 432)
Name: NF7650_low_4
Description: NF7650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7650_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 2624876 - 2624652
Alignment:
| Q |
13 |
aatatcttatttaattctcttgttggttgattgcaagcataattaatgttatattcgtatggaacaacaacttaaatatatcggtcttcacttttttata |
112 |
Q |
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| T |
2624876 |
aatagcttatttaattctcttgttggttaattgcaagcataattaatgttatattcgtatggaacaacaacttaaatatatcggtcttcacttttttata |
2624777 |
T |
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| Q |
113 |
gaactcatattttcaagtagatacgattcgatggaaacaagtatgaaatagtagcatagtatttgaaaaccaatgataccaatgataaaatccgtgttgg |
212 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2624776 |
gaactcatatttccaagtagatatgattcgatggaaacaagtatgaaatagtagcatagtatttgaaaaccaatgataccaatgataaaatccgtgttgg |
2624677 |
T |
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| Q |
213 |
agatgctctaagtttgattataatt |
237 |
Q |
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| T |
2624676 |
agatgctctaagtttgactataatt |
2624652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 237 - 426
Target Start/End: Complemental strand, 2624613 - 2624422
Alignment:
| Q |
237 |
tcacaaatcgtagttgaatgaatactaaatgtttgagtgaagcatatgagaaaggagtagacgaatttatacaatatgcttttgtaaaa--cttcatcct |
334 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||| || ||| || |
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| T |
2624613 |
tcacaaattgtagttgaatgaatactaaatgtttgagtgaagcatatgagaaagaagtagatgaatttatacaatatgtttttgtaaaactctccattct |
2624514 |
T |
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| Q |
335 |
cgtgttaaacgtttgaatgtagatccgttatattttgaggaatacgattgtccaccagtgtaaatgatacaaacaatattagatgacatgaa |
426 |
Q |
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| T |
2624513 |
cgtgttaaatgtttgaatgttgatccgttatattttgaggaatacgattgtccatcgatgtaaatgatacaaacaatattaaatgacatgaa |
2624422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 329
Target Start/End: Complemental strand, 9109091 - 9109049
Alignment:
| Q |
287 |
aaaggagtagacgaatttatacaatatgcttttgtaaaacttc |
329 |
Q |
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| T |
9109091 |
aaaggagtagacgagtttatacaatttgcttttgaaaaacttc |
9109049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 34266197 - 34266257
Alignment:
| Q |
13 |
aatatcttatttaattctcttgttggttgattgcaagcataattaatgttatattcgtatg |
73 |
Q |
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|||| |||| |||||||| ||||||||||||| |||| | ||||||| ||| ||||||||| |
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| T |
34266197 |
aatagcttaattaattcttttgttggttgattacaagaacaattaattttacattcgtatg |
34266257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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