View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7650_low_6 (Length: 401)
Name: NF7650_low_6
Description: NF7650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7650_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 386
Target Start/End: Complemental strand, 47620132 - 47619764
Alignment:
| Q |
16 |
atccgaagaaattagatttatgagtcaacctctcttatagcatatacataattaaccacattttccaaagagtaaaaatagctcttaaatcagtatagtt |
115 |
Q |
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| T |
47620132 |
atccaaagaaattagatttatgaatcaacctctcttataacatatacataattaaccacattttccaaagagtaaaaatagctcttaaatcagtatagtt |
47620033 |
T |
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| Q |
116 |
ccatctatcccacaagccaattaaaatatt-acatccgtgcccacaactaaattaaaaagttccccaaaaacatccacgaaataaagcaattatatgttt |
214 |
Q |
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| T |
47620032 |
ccatctatcccacaagccaattaaaatatttacatccgtgcccacaactaaattaaaaagttccccaaaaaaatccacgaaataaaacaattatatgttt |
47619933 |
T |
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| Q |
215 |
tttcttctctccatttctattttcctttaatcttgtcaatcttgtaagccatacagtagatttgatatacaatttaatttagtatttagtagtattcaat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47619932 |
tttcttctctccatttctattttcctttaatcttgtcaatcttgtaagccatacagtagatttgatatacaatttaatttagtattt---agtattcaat |
47619836 |
T |
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| Q |
315 |
agttagatgagagacaagcatgattaagatgcaaacttgaccaatgtacaattatcatagtagatttgttag |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47619835 |
agttagatgagagacaagcatgattaagatgcaaacttgaccaatgtacaattatcatagtagatttgttag |
47619764 |
T |
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