View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7650_low_7 (Length: 386)
Name: NF7650_low_7
Description: NF7650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7650_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 13 - 370
Target Start/End: Original strand, 1035757 - 1036114
Alignment:
| Q |
13 |
aatattgcattggaaaattcaacttcaactctatctaacgacatcactggtaatgacaaagagaaatttcttgacggacttttagtttcaggatttgatg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1035757 |
aatattgcattggaaaattcaacttcaa---tatctaacgacatcactggtaatgacaaagagaaatttcttgatggacttttagtttcaggatttgatg |
1035853 |
T |
|
| Q |
113 |
aatcatcatgcataagcaggtcacaatctcatcatttctac-acaaaccttctccatatttgttatctaaacttcaaaagtatgaagaaaatcatagaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1035854 |
aatcatcatgcataagcaggtcacaatctcat---ttctaccacaaaccttctccatatttgttatctaaacttggaaagtatgaagaaaatcatagaaa |
1035950 |
T |
|
| Q |
212 |
atgtggaccaaacactagagctttcaacgaagacatgaaaattattgcaaaatataaggaaaatggtactgattgtgctgcaa-----aaacaacatgca |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1035951 |
atgtggaccaaacactagagctttcaacgaagacatgaaaattattgcaaaatataaggaaaatggtactgattgtgctgcaaaaattaaacaacatgca |
1036050 |
T |
|
| Q |
307 |
aatacattatttggttaccagcaaatgggttaggtaaccaaataattagcatggcttcatcatt |
370 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
1036051 |
aatacattattttgttaccagcaaatgggttaggtaaccaaataattaccgcggcttcatcatt |
1036114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 13 - 370
Target Start/End: Complemental strand, 6939087 - 6938723
Alignment:
| Q |
13 |
aatattgcattggaaaattcaacttcaactctatctaacgacatcactggtaatgacaaagagaaatttcttgacggacttttagtttcaggatttgatg |
112 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||| | | || || ||||||| | |||| ||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
6939087 |
aatatttcattgacaaatttaacttcaactccaccaaaagagatcactgatgatgagaaagagaaattgcttgacggacttttagtttctggatttgatg |
6938988 |
T |
|
| Q |
113 |
aatcatcatgcataagcaggtcacaatctcat-------------catttctacacaaaccttctccatatttgttatctaaacttcaaaagtatgaaga |
199 |
Q |
| |
|
|| ||||||| ||||||||| |||||||||| ||| || ||||||||||||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
6938987 |
aagcatcatgtgtaagcaggttacaatctcatttctatcacaaaccatctcctcacaaaccttctccatatttgatatctaaactaagaaaatatgaaga |
6938888 |
T |
|
| Q |
200 |
aaatcatagaaaatgtggaccaaacactagagctttcaacgaagacatgaaaattattgcaaaatataaggaaaatggtactgattgtgctgcaaaaaca |
299 |
Q |
| |
|
| |||||||| |||||||| ||||||||||||| ||| ||||||||||||| ||| |||||| |||| |||||||||| || |||||| |||| |
|
|
| T |
6938887 |
acttcatagaaggtgtggacctaacactagagcttacaatgaagacatgaaaaaaattacaaaatctaagaaaaatggtac---ttctgctgc---aaca |
6938794 |
T |
|
| Q |
300 |
acatgcaaatacattatttggttaccagcaaatgggttaggtaaccaaataattagcatggcttcatcatt |
370 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6938793 |
acatgcaaatacattatttggttacctgcaaatggtttaggtaaccaaataattagcatggcttcatcatt |
6938723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University