View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7651_high_1 (Length: 501)
Name: NF7651_high_1
Description: NF7651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7651_high_1 |
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| [»] scaffold0665 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 121; Significance: 9e-62; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 235 - 486
Target Start/End: Original strand, 7314351 - 7314592
Alignment:
| Q |
235 |
aggagaagaggttttcagcttttgatggagaagagctacacgtacgattgcgttttgttaggtcctcnnnnnnnnnnnnnnnnnnnnnaatatactccaa |
334 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||| |
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| T |
7314351 |
aggagaagaggttttcagtttttgatggagaagagctacacatacgattgccttttgttaggtcct------------ttttttttttaatatactccaa |
7314438 |
T |
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| Q |
335 |
tttgataaaccccaaacatagcgtttgtataaaaacgctaactataaaccccctaataatagcgttcaatgcaaagcgctatctttgcgaagctaagtaa |
434 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7314439 |
tttgataaacaccaaacatagcgtttgtataaaaacgctaactacc--ccccctaataatagcgttcattgcaaagcgctatctttgcgaagctaagtaa |
7314536 |
T |
|
| Q |
435 |
tagcgtttac----ctaaaagcgctatttaattcatattttttagtagcttttctt |
486 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7314537 |
cagcgtttacctagctaaaagcgctatttaatccatattttttagtagcttttctt |
7314592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 58 - 182
Target Start/End: Original strand, 7314233 - 7314357
Alignment:
| Q |
58 |
ggatgggttcgcggtggaagaaaagatagggttcgatgcggtaagatgggttggagtgagagaaggaagagagagatatatacttgaggtttggagacgg |
157 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7314233 |
ggatgggttcgcggtggaagaaaagatagggttccatgcggtaagatgggttggagtgagagaaggaagagagagatatatacttgcggtttggagacgg |
7314332 |
T |
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| Q |
158 |
cgcgcggtgttgtggtggagaagaa |
182 |
Q |
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| T |
7314333 |
cgcgcggttttgtggtggaggagaa |
7314357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 335 - 485
Target Start/End: Complemental strand, 14128846 - 14128702
Alignment:
| Q |
335 |
tttgataaaccccaaacatagcgtttgtataaaaacgctaactataaaccccctaataatagcgttcaatgcaaagcgctatctttgcgaagctaagtaa |
434 |
Q |
| |
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|||||||||||||||||||||||||| || ||||||||||| | | | ||||||||||||||||||| | |||| ||| ||||||||||||||| |
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| T |
14128846 |
tttgataaaccccaaacatagcgttttta------cgctaactataccctctccaataatagcgttcaatgcataccgctgtctctgcgaagctaagtaa |
14128753 |
T |
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| Q |
435 |
tagcgtttacctaaaagcgctatttaattcatattttttagtagcttttct |
485 |
Q |
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|| | ||| |||||||||||||| |||| ||||||||||||||| |||||| |
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| T |
14128752 |
tatcattttcctaaaagcgctatctaatccatattttttagtagtttttct |
14128702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 7314177 - 7314214
Alignment:
| Q |
19 |
ttttgtgattagtgatgcagatcgatgggttttaacgg |
56 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
7314177 |
ttttgtgattagtgatgcagatcgatgggttttaacgg |
7314214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0665 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0665
Description:
Target: scaffold0665; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 335 - 485
Target Start/End: Complemental strand, 3048 - 2904
Alignment:
| Q |
335 |
tttgataaaccccaaacatagcgtttgtataaaaacgctaactataaaccccctaataatagcgttcaatgcaaagcgctatctttgcgaagctaagtaa |
434 |
Q |
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|||||||||||||||||||||||||| || ||||||||||| | | | ||||||||||||||||||| | |||| ||| ||||||||||||||| |
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| T |
3048 |
tttgataaaccccaaacatagcgttttta------cgctaactataccctctccaataatagcgttcaatgcataccgctgtctctgcgaagctaagtaa |
2955 |
T |
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| Q |
435 |
tagcgtttacctaaaagcgctatttaattcatattttttagtagcttttct |
485 |
Q |
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|| | ||| |||||||||||||| |||| ||||||||||||||| |||||| |
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| T |
2954 |
tatcattttcctaaaagcgctatctaatccatattttttagtagtttttct |
2904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 335 - 486
Target Start/End: Complemental strand, 12814242 - 12814091
Alignment:
| Q |
335 |
tttgataaaccccaaacatagcgtttgtataaaaacgctaactataaaccccctaataatagcgttcaatgcaaagcgctatctttgcgaagctaagtaa |
434 |
Q |
| |
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|||||||| |||||||||||| |||| |||||||| ||||||||| || | | |||||||||||| | | |||||||||||||||||| |||||||| |
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| T |
12814242 |
tttgataatccccaaacatagtgtttacataaaaacactaactataccccatccagtaatagcgttcattacgaagcgctatctttgcgaaactaagtaa |
12814143 |
T |
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| Q |
435 |
tagcgtttacctaaaagcgctatttaattcatattttttagtagcttttctt |
486 |
Q |
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|||||||| ||||||| |||||| || ||||||||| ||||| ||||||| |
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| T |
12814142 |
tagcgttttcctaaaatcgctatcgcatccatatttttcagtagtttttctt |
12814091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 336 - 457
Target Start/End: Complemental strand, 4611042 - 4610919
Alignment:
| Q |
336 |
ttgataaacccc-aaacatagcgtttgtataaaaacgctaactataaacccc-ctaataatagcgttcaatgcaaagcgctatctttgcgaagctaagta |
433 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||| | | | |||||||||||||| | ||| ||||||||| |||||||||||| |
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| T |
4611042 |
ttgataaacccccaaacatagcgtttggataaaaacgctaactatacccacatccaataatagcgttcattaagaagtgctatctttccgaagctaagta |
4610943 |
T |
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| Q |
434 |
atagcgtttacctaaaagcgctat |
457 |
Q |
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||||||||| |||||||||||||| |
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| T |
4610942 |
atagcgttttcctaaaagcgctat |
4610919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 472
Target Start/End: Complemental strand, 31309026 - 31308903
Alignment:
| Q |
348 |
aaacatagcgtttgtataaaaacgctaactataaaccccctaataatagcgttcaatgcaaagcgctatctttgcgaagctaagtaatagcgtttaccta |
447 |
Q |
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|||||||||||||| |||||| ||||| ||| |||| | | |||||||||||| || ||||||||| | || | | |||| ||||||||||| |||| |
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| T |
31309026 |
aaacatagcgtttggataaaa-cgctatctaaaaactctccaataatagcgtttgataaaaagcgctaacgttccaatactaaataatagcgttttccta |
31308928 |
T |
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| Q |
448 |
aaagcgctatttaattcatattttt |
472 |
Q |
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|||||| ||||||| |||| ||||| |
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| T |
31308927 |
aaagcgatatttaactcatgttttt |
31308903 |
T |
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