View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7651_high_2 (Length: 294)
Name: NF7651_high_2
Description: NF7651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7651_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 289
Target Start/End: Complemental strand, 5282006 - 5281734
Alignment:
| Q |
17 |
actatcttggtaaagtatttcattttgatgtttattatattatatctgaacataatttaacatgatgaactcaaattctaggtaatggggggtggaagag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5282006 |
actatcttggtaaagtatttcattttgatgtttattatattatatctgaacataatttaacatgatgaactcaaattctaggtaatggagggtggaagag |
5281907 |
T |
|
| Q |
117 |
ttattcaatcaggtagttatgagaatattttaacatctggaacagcctttgaactacttgtgagtgctcataaagacaaagttactgagttgaatcgaga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5281906 |
ttattcaatcaggtagttatgagaatattttaacatctggaacagcctttgaactacttgtgagtgctcataaagacaaagttactgagttgaatcgaga |
5281807 |
T |
|
| Q |
217 |
tagtgaaaaaagaggaggttacgaaaatgaggttttgcctgatcctcaagactctcatggttttcatctcact |
289 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5281806 |
tagtgaaaatagaggaggttacgaaaatgaggttttgcctaatcctcaagactctcatggttttcatctcact |
5281734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 17 - 289
Target Start/End: Complemental strand, 14949241 - 14948971
Alignment:
| Q |
17 |
actatcttggtaaagtatttcattttgatgtttattatattatatctgaacataatttaacatgatgaactcaaattctaggtaatggggggtggaagag |
116 |
Q |
| |
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||||||||||||||||||||||||| ||||| ||||||||| |||||||||| | || || |||||||||||||||||||||||| | ||||| || |
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| T |
14949241 |
actatcttggtaaagtatttcatttggatgtctattatattccttctgaacatact--aatatcatgaactcaaattctaggtaatggacgatggaaaag |
14949144 |
T |
|
| Q |
117 |
ttattcaatcaggtagttatgagaatattttaacatctggaacagcctttgaactacttgtgagtgctcataaagacaaagttactgagttgaatcgaga |
216 |
Q |
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|||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| ||| |
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| T |
14949143 |
ttattcaatcaggtagttatgagaatctcctaaaatctggaacagcctttgaactacttgtgagtgctcataaagacacaattaatgagttgaatcaaga |
14949044 |
T |
|
| Q |
217 |
tagtgaaaaaagaggaggttacgaaaatgaggttttgcctgatcctcaagactctcatggttttcatctcact |
289 |
Q |
| |
|
||||||||| | ||||||| ||||||||||||||| || |||||||||||| |||||||| |||||||| |
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| T |
14949043 |
tagtgaaaataatggaggttctgaaaatgaggttttgtctaatcctcaagacttgcatggtttatatctcact |
14948971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 5307341 - 5307615
Alignment:
| Q |
17 |
actatcttggtaaagtatttcattttgatg--tttattatattatatctgaacataatttaacatgatgaactcaaattctaggtaatggggggtggaag |
114 |
Q |
| |
|
|||||||||||||| ||||| |||| ||| | |||||| ||| || ||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5307341 |
actatcttggtaaaatattttatttggattcctgtattattttacatttgaacattgtttaacatgatgaactcaaattctaggtaatggagggtggaag |
5307440 |
T |
|
| Q |
115 |
agttattcaatcaggtagttatgagaatattttaacatctggaacagcctttgaactacttgtgagtgctcataaagacaaagttactgagttgaatcga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| | | ||| |||||| ||||||||||| |||||||| || ||||| |||| | ||| ||||||||||| | |
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| T |
5307441 |
agttattcaatcaggtagttatgagaatctcctgacaactggaaaagcctttgaacaacttgtgaaagcacataaggacacaattaatgagttgaatcaa |
5307540 |
T |
|
| Q |
215 |
gatagtgaaaaaagaggaggttacgaaaatgaggttttgcctgatcctcaagactctcatggttttcatctcact |
289 |
Q |
| |
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| || |||||| | | ||| || ||||||||||||||| || |||||||||||| ||||||||||| ||||||| |
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| T |
5307541 |
gttaatgaaaataaaagagattctgaaaatgaggttttgtctaatcctcaagactatcatggttttcctctcact |
5307615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 15126134 - 15126307
Alignment:
| Q |
17 |
actatcttggtaaagtatttcattttgatgtttattatattatatctgaacataatttaacatgatgaactcaaattctaggtaatggggggtggaagag |
116 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||| ||||||| ||| | || ||||||||||||||||||||||||||| || ||||| || |
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| T |
15126134 |
actatcttggtaaagtatttcatttggatgtctattatattacatctgaatgtaact-aatatgatgaactcaaattctaggtaatggaggatggaaaag |
15126232 |
T |
|
| Q |
117 |
ttattcaatcaggtagttatgagaatattttaacatctggaacagcctttgaactacttgtgagtgctcataaag |
191 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15126233 |
ttattcaatcaggtagttatgagaatctcctaaaatctggaacagcctttgaactacttgtgagtgctcataaag |
15126307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 5290007 - 5289769
Alignment:
| Q |
17 |
actatcttggtaaagtatttcattttgatg--tttattatattatatctgaacataatttaacatgatgaactcaaattctaggtaatggggggtggaag |
114 |
Q |
| |
|
|||||||||||||| |||||||||| ||| | |||||||||| || ||||||| ||||||| |||||||||||||||||||| |||| |||||||| |
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| T |
5290007 |
actatcttggtaaaatatttcatttggattcctgtattatattacatttgaacattgtttaacaggatgaactcaaattctaggtcatggagggtggaaa |
5289908 |
T |
|
| Q |
115 |
agttattcaatcaggtagttatgagaatattttaacatctggaacagcctttgaactacttgtgagtgctcataaagacaaagttactgagttgaatcga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| | | ||| |||||||||||||||||| ||||||||| || ||||| |||| | ||||||||||||||| | |
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| T |
5289907 |
agttattcaatcaggtagttatgagaatctcctgacagctggaacagcctttgaacaacttgtgagagcacataaggacacaattactgagttgaatcaa |
5289808 |
T |
|
| Q |
215 |
gatagtgaaaaaagaggaggttacgaaaatgaggttttg |
253 |
Q |
| |
|
||| ||||| | || ||||| ||||||||||||||| |
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| T |
5289807 |
gatcaggaaaataaagaaggttctgaaaatgaggttttg |
5289769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 11833829 - 11833894
Alignment:
| Q |
17 |
actatcttggtaaagtatttcattttgatgtttattatattatatctgaacataatttaacatgat |
82 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||| || |||||||| ||||||||||| |
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|
| T |
11833829 |
actatcttggtaaattatttcattttgatgcttattatattgcatttgaacatagtttaacatgat |
11833894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 205
Target Start/End: Original strand, 5314403 - 5314523
Alignment:
| Q |
85 |
actcaaattctaggtaatggggggtggaagagttattcaatcaggtagttatgagaatattttaacatctggaacagcctttgaactacttgtgagtgct |
184 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||||||||| || |||||| ||||| | || | | |||| ||| ||||||| |||||||| || |
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|
| T |
5314403 |
actcaaattctaggtaatggaggatggaaaagttattcaatcgggcagttatcagaatctcttgaaagctgggacaacctttgacgaacttgtgaacgcc |
5314502 |
T |
|
| Q |
185 |
cataaagacaaagttactgag |
205 |
Q |
| |
|
|||||||||| |||||||||| |
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| T |
5314503 |
cataaagacatagttactgag |
5314523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 15126336 - 15126380
Alignment:
| Q |
244 |
tgaggttttgcctgatcctcaagactctcatggttttcatctcac |
288 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||| ||||||| |
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|
| T |
15126336 |
tgaggttttgtctaatcctcaagactctcatggtttttatctcac |
15126380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 31525978 - 31525851
Alignment:
| Q |
91 |
attctaggtaatggggggtggaagagttattcaatcaggtagttatgagaatattttaacatctggaacagcctttgaactacttgtgagtgctcataaa |
190 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||||||||||||||||||| | ||| | |||| ||||||||||||| |||||||| || || ||| |
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| T |
31525978 |
attctaggtaatggaggatggaaaagttattcaatcaggtagttatgagaatctcctaatagctgggacagcctttgaacaacttgtgaacgcgcacaaa |
31525879 |
T |
|
| Q |
191 |
gacaaagttactgagttgaatcgagata |
218 |
Q |
| |
|
||| | ||||||||||||||| ||||| |
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|
| T |
31525878 |
gacgcacttactgagttgaatcaagata |
31525851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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