View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7651_high_3 (Length: 252)
Name: NF7651_high_3
Description: NF7651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7651_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 11396019 - 11396254
Alignment:
| Q |
1 |
gatcatgcacatttcacaaacacaacatagcacaaggtgcaccaatataacaacaacacatttatttcctcaaaagctcgttacaaacaatttaaaaggc |
100 |
Q |
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| T |
11396019 |
gatcatgcacatttcacaaacacaacatagcacaaggtgcaccaatataacaacaacacatttatttcctcaaaagctcgttacaaacaatttaaaaggc |
11396118 |
T |
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| Q |
101 |
aaagaagccagctgcggcgacagcaacaactgcggagactttcaaagaagaagcaccactagctgcaccagggccggaaacaggagggacaacgtcaaca |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11396119 |
aaagaagccagctgcggcgacagcaacaacagcggagactttcaaagaagaagcaccactagctgcaccagggccggaaacaggagggacaacgtcaaca |
11396218 |
T |
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| Q |
201 |
gccactggggattgggcaggaggtgaatcagaaaag |
236 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
11396219 |
accactggggattgggcaggaggtgaatcagaaaag |
11396254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 11404041 - 11404276
Alignment:
| Q |
1 |
gatcatgcacatttcacaaacacaacatagcacaaggtgcaccaatataacaacaacacatttatttcctcaaaagctcgttacaaacaatttaaaaggc |
100 |
Q |
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| T |
11404041 |
gatcatgcacatttcacaaacacaacatagcacaaggtgcaccaatataacaacaacacatttatttcctcaaaagctcgttacaaacaatttaaaaggc |
11404140 |
T |
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| Q |
101 |
aaagaagccagctgcggcgacagcaacaactgcggagactttcaaagaagaagcaccactagctgcaccagggccggaaacaggagggacaacgtcaaca |
200 |
Q |
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| T |
11404141 |
aaagaagccagctgcggcgacagcaacaatagcggagactttcaaagaagaagcaccactagctgcaccagggccggaaacaggagggacaacgtcaaca |
11404240 |
T |
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| Q |
201 |
gccactggggattgggcaggaggtgaatcagaaaag |
236 |
Q |
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| T |
11404241 |
accactggggattgggcaggaggtgaatcagaaaag |
11404276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 11380641 - 11380876
Alignment:
| Q |
1 |
gatcatgcacatttcacaaacacaacatagcacaaggtgcaccaatataacaacaacacatttatttcctcaaaagctcgttacaaacaatttaaaaggc |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11380641 |
gatcatgcacatttcacaaacacaatatagcacaaggtgcaccaatataacaacaacacatttatttcctcaaaagctcgttacaaacaatttaaaaggc |
11380740 |
T |
|
| Q |
101 |
aaagaagccagctgcggcgacagcaacaactgcggagactttcaaagaagaagcaccactagctgcaccagggccggaaacaggagggacaacgtcaaca |
200 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11380741 |
aaagtagccagctgcggcgacagcaacaacagcggagactttcaaagaagaagcaccactagctgcaccagggccggaaacaggagggacaacgtcaaca |
11380840 |
T |
|
| Q |
201 |
gccactggggattgggcaggaggtgaatcagaaaag |
236 |
Q |
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| T |
11380841 |
accactggggattgggcaggaggtgaatcagaaaag |
11380876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 11452726 - 11452882
Alignment:
| Q |
1 |
gatcatgcacatttcacaaacacaacatagcacaaggtgcaccaatataacaacaacacatttatttcctcaaaagctcgttacaaacaatttaaaaggc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| |
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| T |
11452726 |
gatcatgcacatttcacaaacacaacatagcacaaggtgcaccaatgttacaacaacaaatttatttcctc-------cattacaaataatttaaaaggc |
11452818 |
T |
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| Q |
101 |
aaagaagccagctgcggcgacagcaacaactgcggagactttcaaagaagaagcaccactagct |
164 |
Q |
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|||||| ||| ||||||||||||||||||| ||||| ||||||| |||||||||| |||||||| |
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| T |
11452819 |
aaagaaaccaactgcggcgacagcaacaacagcggatactttcagagaagaagcatcactagct |
11452882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 230
Target Start/End: Original strand, 11452953 - 11452984
Alignment:
| Q |
199 |
cagccactggggattgggcaggaggtgaatca |
230 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
11452953 |
cagccactggggattgggcaggaggtgaatca |
11452984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 35401300 - 35401374
Alignment:
| Q |
1 |
gatcatgcacatttcacaaacacaacatagcacaaggtgcaccaatataacaacaacacatttatttcctcaaaa |
75 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||| |
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| T |
35401300 |
gatcatgcacatttcacaaacacaacatagcacaaggtgcaccaatattacaccaacacgtttatttcctcaaaa |
35401374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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