View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7651_low_3 (Length: 282)

Name: NF7651_low_3
Description: NF7651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7651_low_3
NF7651_low_3
[»] chr8 (14 HSPs)
chr8 (1-274)||(27980821-27981104)
chr8 (1-274)||(28038123-28038406)
chr8 (1-153)||(27887636-27887788)
chr8 (1-153)||(27946294-27946446)
chr8 (1-153)||(28026537-28026689)
chr8 (210-262)||(27887506-27887558)
chr8 (210-262)||(27946164-27946216)
chr8 (210-262)||(28026407-28026459)
chr8 (210-256)||(27969496-27969542)
chr8 (187-217)||(16895341-16895371)
chr8 (187-217)||(16896278-16896308)
chr8 (184-217)||(27887567-27887600)
chr8 (184-217)||(27946225-27946258)
chr8 (184-217)||(28026468-28026501)
[»] chr4 (1 HSPs)
chr4 (187-248)||(12212423-12212484)
[»] chr3 (4 HSPs)
chr3 (210-274)||(54431711-54431775)
chr3 (187-217)||(52401174-52401204)
chr3 (187-217)||(54430957-54430987)
chr3 (222-274)||(52402025-52402077)
[»] chr1 (1 HSPs)
chr1 (187-217)||(15809654-15809684)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 27981104 - 27980821
Alignment:
Q  1 tcaattatgatagataatattcttgaaatcttagctgaaaattaacattcttcttgagcaagtgttctcaatcctgagttcaaaaagccaacaagttcta 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27981104 tcaattatgatagataatattcttgaaatcttagttgaaaattaacattcttcttgagcaagtgttctcaatcctgagttcaaaaagtcaacaagttcta 27981005  T
Q  101 tgatttcgttttgatcaattagcttgcacct---tcttttgttttcattcttccaannnnnnnnnnnnnnnnatagggaatcattc-------agaaatg 190  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||                ||||||||||||||       | |||||    
T  27981004 tgatttcgttttgatcaattagcttgcaccttcttcttttgttttcattcttccaattttttaattttttttatagggaatcattcattcttaaaaaatg 27980905  T
Q  191 ctaaggacaaactctctgtcacactctcacccattggtccacgtcaccaatattttaacatgatttaccagtcacaggttctgc 274  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  27980904 ctaaggacaaactctctgtcacactttcacccattggtccacgtcaccaatattttaacatgatttaccagttactggttctgc 27980821  T

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Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 28038406 - 28038123
Alignment:
Q  1 tcaattatgatagataatattcttgaaatcttagctgaaaattaacattcttcttgagcaagtgttctcaatcctgagttcaaaaagccaacaagttcta 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28038406 tcaattatgatagataatattcttgaaatcttagttgaaaattaacattcttcttgagcaagtgttctcaatcctgagttcaaaaagtcaacaagttcta 28038307  T
Q  101 tgatttcgttttgatcaattagcttgcacct---tcttttgttttcattcttccaannnnnnnnnnnnnnnnatagggaatcattc-------agaaatg 190  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||                ||||||||||||||       | |||||    
T  28038306 tgatttcgttttgatcaattagcttgcaccttcttcttttgttttcattcttccaattttttaattttttttatagggaatcattcattcttaaaaaatg 28038207  T
Q  191 ctaaggacaaactctctgtcacactctcacccattggtccacgtcaccaatattttaacatgatttaccagtcacaggttctgc 274  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  28038206 ctaaggacaaactctctgtcacactttcacccattggtccacgtcaccaatattttaacatgatttaccagttactggttctgc 28038123  T

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Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 27887788 - 27887636
Alignment:
Q  1 tcaattatgatagataatattcttgaaatcttagctgaaaattaacattcttcttgagcaagtgttctcaatcctgagttcaaaaagccaacaagttcta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||| ||||  |||||||    
T  27887788 tcaattatgatagataatattcttgaaatcttagctgaaaattaacattcttctcgagcaagtgttctcaatcccaagttcaaaaatccaaatagttcta 27887689  T
Q  101 tgatttcgttttgatcaattagcttgcaccttcttttgttttcattcttccaa 153  Q
     | ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27887688 cggtttcgttttgatcaattcgcttgcaccttcttttgttttcattcttccaa 27887636  T

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Target: chr8; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 27946446 - 27946294
Alignment:
Q  1 tcaattatgatagataatattcttgaaatcttagctgaaaattaacattcttcttgagcaagtgttctcaatcctgagttcaaaaagccaacaagttcta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||| ||||  |||||||    
T  27946446 tcaattatgatagataatattcttgaaatcttagctgaaaattaacattcttctcgagcaagtgttctcaatcccaagttcaaaaatccaaatagttcta 27946347  T
Q  101 tgatttcgttttgatcaattagcttgcaccttcttttgttttcattcttccaa 153  Q
     | ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27946346 cggtttcgttttgatcaattcgcttgcaccttcttttgttttcattcttccaa 27946294  T

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Target: chr8; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 28026689 - 28026537
Alignment:
Q  1 tcaattatgatagataatattcttgaaatcttagctgaaaattaacattcttcttgagcaagtgttctcaatcctgagttcaaaaagccaacaagttcta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||| ||||  |||||||    
T  28026689 tcaattatgatagataatattcttgaaatcttagctgaaaattaacattcttctcgagcaagtgttctcaatcccaagttcaaaaatccaaatagttcta 28026590  T
Q  101 tgatttcgttttgatcaattagcttgcaccttcttttgttttcattcttccaa 153  Q
     | ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28026589 cggtttcgttttgatcaattcgcttgcaccttcttttgttttcattcttccaa 28026537  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 27887558 - 27887506
Alignment:
Q  210 cacactctcacccattggtccacgtcaccaatattttaacatgatttaccagt 262  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||| |||||    
T  27887558 cacactctcactcattggtccacgtcaccaatattttaaaatgatttgccagt 27887506  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 27946216 - 27946164
Alignment:
Q  210 cacactctcacccattggtccacgtcaccaatattttaacatgatttaccagt 262  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||| |||||    
T  27946216 cacactctcactcattggtccacgtcaccaatattttaaaatgatttgccagt 27946164  T

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Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 28026459 - 28026407
Alignment:
Q  210 cacactctcacccattggtccacgtcaccaatattttaacatgatttaccagt 262  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||| |||||    
T  28026459 cacactctcactcattggtccacgtcaccaatattttaaaatgatttgccagt 28026407  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 27969542 - 27969496
Alignment:
Q  210 cacactctcacccattggtccacgtcaccaatattttaacatgattt 256  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||||    
T  27969542 cacactcacactcattggtccacgtcaccaatattttaaaatgattt 27969496  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 217
Target Start/End: Original strand, 16895341 - 16895371
Alignment:
Q  187 aatgctaaggacaaactctctgtcacactct 217  Q
    |||||||||||||||||||||||||||||||    
T  16895341 aatgctaaggacaaactctctgtcacactct 16895371  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 217
Target Start/End: Complemental strand, 16896308 - 16896278
Alignment:
Q  187 aatgctaaggacaaactctctgtcacactct 217  Q
    |||||||||||||||||||||||||||||||    
T  16896308 aatgctaaggacaaactctctgtcacactct 16896278  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 27887600 - 27887567
Alignment:
Q  184 agaaatgctaaggacaaactctctgtcacactct 217  Q
    |||||||||||||||||||||||| |||||||||    
T  27887600 agaaatgctaaggacaaactctctatcacactct 27887567  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 27946258 - 27946225
Alignment:
Q  184 agaaatgctaaggacaaactctctgtcacactct 217  Q
    |||||||||||||||||||||||| |||||||||    
T  27946258 agaaatgctaaggacaaactctctatcacactct 27946225  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 28026501 - 28026468
Alignment:
Q  184 agaaatgctaaggacaaactctctgtcacactct 217  Q
    |||||||||||||||||||||||| |||||||||    
T  28026501 agaaatgctaaggacaaactctctatcacactct 28026468  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 12212423 - 12212484
Alignment:
Q  187 aatgctaaggacaaactctctgtcacactctcacccattggtccacgtcaccaatattttaa 248  Q
    ||||||||||||||||||| ||||||||||||| | |||| |||||||||||| ||||||||    
T  12212423 aatgctaaggacaaactctttgtcacactctcatctattgctccacgtcaccattattttaa 12212484  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 54431775 - 54431711
Alignment:
Q  210 cacactctcacccattggtccacgtcaccaatattttaacatgatttaccagtcacaggttctgc 274  Q
    |||||| |||| |||||||||||||||| |||||||||| |||||||||| || || ||||||||    
T  54431775 cacactttcactcattggtccacgtcactaatattttaaaatgatttacctgttactggttctgc 54431711  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 217
Target Start/End: Original strand, 52401174 - 52401204
Alignment:
Q  187 aatgctaaggacaaactctctgtcacactct 217  Q
    |||||||||||||||||||||||||||||||    
T  52401174 aatgctaaggacaaactctctgtcacactct 52401204  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 217
Target Start/End: Original strand, 54430957 - 54430987
Alignment:
Q  187 aatgctaaggacaaactctctgtcacactct 217  Q
    |||||||||||||||||||||||||||||||    
T  54430957 aatgctaaggacaaactctctgtcacactct 54430987  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 52402077 - 52402025
Alignment:
Q  222 cattggtccacgtcaccaatattttaacatgatttaccagtcacaggttctgc 274  Q
    ||||||||||| |||| || ||||||| ||| ||||||||| |||||||||||    
T  52402077 cattggtccacatcactaacattttaaaatgctttaccagttacaggttctgc 52402025  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 217
Target Start/End: Complemental strand, 15809684 - 15809654
Alignment:
Q  187 aatgctaaggacaaactctctgtcacactct 217  Q
    |||||||||||||||||||||||||||||||    
T  15809684 aatgctaaggacaaactctctgtcacactct 15809654  T

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