View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7652_high_2 (Length: 499)
Name: NF7652_high_2
Description: NF7652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7652_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 13 - 480
Target Start/End: Original strand, 56009085 - 56009554
Alignment:
| Q |
13 |
aatattaagttcagatgataacaggaaaaacagaaacgaagactcctctaaaaggttagcgtggctgatacatgctaacaagtttgttctgtttgtctta |
112 |
Q |
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| T |
56009085 |
aatattaagttcagatgataacaggaaaaacagaaacgaagactcctctaaaaggttagcgtggctgatacatgctaacaagtttgttctgtttgtctta |
56009184 |
T |
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| Q |
113 |
actataccataacaatgttataaaatttctgcagggtgatgaaaaaacattgacgaatctttatttggagatagctaaaggaattttattgatcaactct |
212 |
Q |
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| T |
56009185 |
actatacgataacaatgttataaaatttctgcagggtgatgaaaaaacattgacgaatctttatttggagatagctaaaggaattttattgatcaactct |
56009284 |
T |
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| Q |
213 |
g--atttttctttataaatacaaaacatttgatgagattagtatattggaataaatctccactagcgaaaaggcgttccataatttgattatgtacaaac |
310 |
Q |
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| T |
56009285 |
gtgatttttctttgtaaatacaaaacatttgatgagattagtatattggaataaatttccactagcgaaaaggagttccataatttgattatgtacaaac |
56009384 |
T |
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| Q |
311 |
aaaaatgttcaatgtgaacctgtaaatttgtataaaagagtttctttgattgtgagttttacacactatactgttcaagtttttcaaatgcatcaacacg |
410 |
Q |
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| T |
56009385 |
aaaaatgttcaatgtgaacctgtaaatttgtataaaagagtttctttgattgtgagttttacacactatactgttcaagtttttcaaatgcatcaacacg |
56009484 |
T |
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| Q |
411 |
aaattgaatatgaggaacacttggaaaaacatcacttgagcatttgaaatgtaaaaattatattctacac |
480 |
Q |
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| T |
56009485 |
aaattgaatatgaggaacacttggaaaaacatcacttgagcatttgaaatgtaaaaattatattctacac |
56009554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 9645671 - 9645724
Alignment:
| Q |
123 |
aacaatgttataaaatttctgcagggtgatgaaaaaacattgacgaatctttat |
176 |
Q |
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| T |
9645671 |
aacaatgctataaaattactgcagggtgatgaaagaacattgaagattctttat |
9645724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 24538244 - 24538286
Alignment:
| Q |
114 |
ctataccataacaatgttataaaatttctgcagggtgatgaaa |
156 |
Q |
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| T |
24538244 |
ctataccataacaatgttataaaattgttgcagtgtgatgaaa |
24538286 |
T |
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