View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7652_high_3 (Length: 379)
Name: NF7652_high_3
Description: NF7652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7652_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 373
Target Start/End: Complemental strand, 1947980 - 1947637
Alignment:
| Q |
17 |
ataaacttggtgagttgatggtgatgtagttattcaacaattccacatgatgatgatgatataaacttgaaatatggtgtgcacatattttcttcaattc |
116 |
Q |
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| T |
1947980 |
ataaacttggtgagttgatggtgatgtagttattcaacaattccacatgatgatgatgatataaacttgaaatatggtgtgcacatattttcttcaattc |
1947881 |
T |
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| Q |
117 |
cacatgattagaaatgtattttggtgc-nnnnnnnnncctttctaatattgaactattcttaatgtcacatttataccttaatcgcaaacacttgggggc |
215 |
Q |
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| T |
1947880 |
cacatgattagaaatgtattttggtgcttttttttttcctttctaatattgaactattcttaatgtcacatttataccttaatcgcaaacacttgggggc |
1947781 |
T |
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| Q |
216 |
atgcttggttttgaaaccacaagaatttattttgtaaaattaattttacttaaaatgagttgaacgtaaagtttttatttttcaagtgaagttcatcgat |
315 |
Q |
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| T |
1947780 |
atgcttggttttgaaacca--------------ataaaattaattttacttaaaatgagttgaacgtaaagtttttatttttcaagtgaagttcatcgat |
1947695 |
T |
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| Q |
316 |
gttggtattttctcataatcatatcatatatcacattattttaaacatttcatatcac |
373 |
Q |
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| T |
1947694 |
gttggtattttctcataatcatatcatatatcacattattttaaacatttcatatcac |
1947637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 2030061 - 2030154
Alignment:
| Q |
34 |
atggtgatgtagttattcaacaattccacatgatgatgatgatataaacttgaaatatggtgtgcacatatt---ttcttcaattccacatgattag |
127 |
Q |
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| T |
2030061 |
atggtgatgtagttattcattaattccacatga---tgatgatataaacttgaaatatggtgtgcacatatttagttctttagttccacatgattag |
2030154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 2031007 - 2031117
Alignment:
| Q |
17 |
ataaacttggtgagttgatggtgatgtagttattcaacaattccacatgatgatgatgatataaacttgaaatatggtgtgcacatatt---ttcttcaa |
113 |
Q |
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|||| |||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||| | | ||||||||||| |||||||| |
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| T |
2031007 |
ataagcttggtgagttgatggtgatgt---tattcatcaattccacgaaatgatgatgatataaacttgaaaatttgcgtgcacatatttaattcttcaa |
2031103 |
T |
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| Q |
114 |
ttccacatgattag |
127 |
Q |
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| T |
2031104 |
ttccacatgattag |
2031117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 4273259 - 4273298
Alignment:
| Q |
239 |
aatttattttgtaaaattaattttacttaaaatgagttga |
278 |
Q |
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| T |
4273259 |
aattgattttgtaaaattaattttacttaaaatgagttga |
4273298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 374
Target Start/End: Original strand, 30537801 - 30537868
Alignment:
| Q |
307 |
ttcatcgatgttggtattttctcataatcatatcatatatcacattattttaaacatttcatatcact |
374 |
Q |
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||||||||||||| ||||||||||| |||| ||||||||||| || |||| |||||| ||| |||||| |
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| T |
30537801 |
ttcatcgatgttgatattttctcatcatcaaatcatatatcatatcatttaaaacatatcaaatcact |
30537868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 3954958 - 3954918
Alignment:
| Q |
334 |
tcatatcatatatcacattattttaaacatttcatatcact |
374 |
Q |
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| T |
3954958 |
tcatatcatatatcacattttttaaaacatgtcatatcact |
3954918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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