View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7653_high_2 (Length: 567)
Name: NF7653_high_2
Description: NF7653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7653_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 17 - 561
Target Start/End: Complemental strand, 195685 - 195140
Alignment:
| Q |
17 |
agcatctttaccaaaacgtgcttagtttcttaaaaatatacttgctttgtaaaatggaagaaccttatttacatcagatacataaccaggtgtgaatgtg |
116 |
Q |
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| T |
195685 |
agcatctttaccaaaacgtgcttagtttcttaaaaatatacttgctttgtaaaatggaagaaccttatttacatcagatacataaccaggtgtgaatgtg |
195586 |
T |
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| Q |
117 |
attcttaatttgcggaccagcctaaacaaaatattttgttatatttttgttggtcattcttattctttatttctagacacacaagtacatgtaaaatata |
216 |
Q |
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| T |
195585 |
attcttaatttgcggaccagcctaaacaaaatattttgttatatttttgttggtcattcttattctttatttctagacacacaagtacatgtaaaatata |
195486 |
T |
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| Q |
217 |
gcaa-gctcaatacaatacaagctgtcaagaaagctttggtcataacttgaacgtccctagcaaaatcagccgttaactagtttgatcgaagtcaatcgc |
315 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
195485 |
gcaaagctcaatacaatacaagttgtcaagaaagctttggtcataacttgaacgtccctagcaaaatcagccgttaactagtttgatcgaagtcaatcgc |
195386 |
T |
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| Q |
316 |
atgcttttgctcctcatttcgatgcttctcttccttatttcatcgacaaatgattcaatattgcggtgtgaagaaccaccatctctaatagcagcttccg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
195385 |
atgcttttgctcctcatttcgatgcttctcttccttatttcatcgacaaatgattcaatattgcggtgtgaagaaccaccatctctaatagcagcttccg |
195286 |
T |
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| Q |
416 |
ctgccgccttcaagctgagcacattttgctttatctcctttgccttggttccaacagttgcctccaacaaacacttgttgacctcatctctgtttatcaa |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
195285 |
ctgccgccttcaagctgagcacattttgctttatctcctttgccttggttccaacagttgcctccaacaaacacttgttaacctcatctctgtttatcaa |
195186 |
T |
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| Q |
516 |
ttcgtttgcagcttcacccttgcacattccaatcccaactccatac |
561 |
Q |
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| T |
195185 |
ttcgtttgcagcttcacccttgcacattccaatcccaactccatac |
195140 |
T |
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