View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7653_low_1 (Length: 613)
Name: NF7653_low_1
Description: NF7653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7653_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 83 - 608
Target Start/End: Original strand, 39864309 - 39864843
Alignment:
| Q |
83 |
taatctcattcgataataaaaatgttaaattaaattgtgggtc-------------aagataatgaatctgctaagggtttccaaattctcgacaagaaa |
169 |
Q |
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| T |
39864309 |
taatctcattcgataataaaaatgttaaattaaattgtgggtttccaattgtcttgaagaaaatgaatctgctaagggtttccaaattctcgacaagaaa |
39864408 |
T |
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| Q |
170 |
taaaaactgggtttacatagatcatatatgatgatgaccaataagatcattttaactcttaagaaacatttacgatcataatcttcagagtagtgaaatt |
269 |
Q |
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| T |
39864409 |
taaaaaccgggtttacatagatcatatatgatga---ccaataagatcattttaactcttaagaaacatttacgatcataatcttcagagtagtgaaatt |
39864505 |
T |
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| Q |
270 |
gaagttgaggtctatgaattatgtaactctgagaagctttcaaggaggatgggaataagcgtggattcccgaccaagtaggtaatgatggaggcaaaaga |
369 |
Q |
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| T |
39864506 |
gaagttgaggtctatgaattatgtaactctgagaagctttcaaggaggatgggaataagcgtggattcc-gaccaagtaggtaatgatggaggcaaaaga |
39864604 |
T |
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| Q |
370 |
aagagaaagagttagatggggagagagataccctacatacacatttaagatacacctgcaaaaagaagctataaactaattattaattaaaaagaaaaag |
469 |
Q |
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| T |
39864605 |
aagagaaagagttagatggggagagagataccctacatacacatttaagatacacctgcaaaaagaagctataaactaattattaattaaaaagaaaaag |
39864704 |
T |
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| Q |
470 |
gaatttcttctgagaaaagggtaaaaacagcaagataattgctttttgcgggtggcacttgaaatgaaatgttgaatctttttagggtttatcagtgcat |
569 |
Q |
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| T |
39864705 |
gaatttcttctgagaaaagggaaaaaacagcaagataattgctttttgcgggtggcacttgaaatcaaatgttgaatctttttagggtttatcagtgcat |
39864804 |
T |
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| Q |
570 |
ccttggtttcatccttgtcatctccatcttcatctcact |
608 |
Q |
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| T |
39864805 |
ccttggtttcatccttgtcatctccatcttcatatcact |
39864843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 39863277 - 39863331
Alignment:
| Q |
31 |
attctcttcattgctcaacattgggatgaaatttggggcttgggcatttgactaa |
85 |
Q |
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| T |
39863277 |
attctcttcattgctcaacattgggatgaaatttggggcttgggcatttgactaa |
39863331 |
T |
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