View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7653_low_6 (Length: 214)
Name: NF7653_low_6
Description: NF7653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7653_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 12572079 - 12572167
Alignment:
| Q |
16 |
aatatccagcctaaaaaactgcaacaaaatatacttaaaattgaaccttaggatagctacaaacactgtgccaacctataaattataac |
104 |
Q |
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| T |
12572079 |
aatatccagcctaaaaaactgcaacaaaatatactcaaaattgaaccttaggatagctacaaacactgtgccaacctataaattataac |
12572167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 13548543 - 13548631
Alignment:
| Q |
16 |
aatatccagcctaaaaaactgcaacaaaatatacttaaaattgaaccttaggatagctacaaacactgtgccaacctataaattataac |
104 |
Q |
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| T |
13548543 |
aatatccagcctaaaaaactgcaacaaaatatactcaaaattgaaccttaggatagctacaaacactgtgccaacctataaattataac |
13548631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 12572186 - 12572248
Alignment:
| Q |
126 |
ttgtgttagactaactttggggatgactctataaaga---cctgcataatttcaattttaaat |
185 |
Q |
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| T |
12572186 |
ttgtgttagactaactttggggatgattctataaagattctctgcataattttaattttaaat |
12572248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 13548650 - 13548712
Alignment:
| Q |
126 |
ttgtgttagactaactttggggatgactctataaaga---cctgcataatttcaattttaaat |
185 |
Q |
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| T |
13548650 |
ttgtgttagactaactttggggatgattctataaagattctctgcataattttaattttaaat |
13548712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 4351911 - 4351852
Alignment:
| Q |
126 |
ttgtgttagactaactttggggatgactctataaagacctgcataatttcaattttaaat |
185 |
Q |
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| T |
4351911 |
ttgtgttagactaactttggggatgattctataaagacctgcataatttcaattttaaat |
4351852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 4351975 - 4351933
Alignment:
| Q |
62 |
cttaggatagctacaaacactgtgccaacctataaattataac |
104 |
Q |
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| T |
4351975 |
cttagtatagctacaaacattgtgccaacctataacttataac |
4351933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 770817 - 770761
Alignment:
| Q |
126 |
ttgtgttagactaactttggggatgactctataaagacctgcataatttcaatttta |
182 |
Q |
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| T |
770817 |
ttgtgttagactaactttggggatgattctatatagacctacataatttcaatttta |
770761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 770906 - 770842
Alignment:
| Q |
37 |
caacaaaatatacttaaaattgaaccttaggatagctacaaacactgtgccaacctataaattat |
101 |
Q |
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| T |
770906 |
caacaaaacatacacaaaattgaaccttattatggctacaaacattgtaccagcctataaattat |
770842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 8028077 - 8028135
Alignment:
| Q |
126 |
ttgtgttagactaactttggggatgactctataaagacctgcataatttcaattttaaat |
185 |
Q |
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| T |
8028077 |
ttgtgttagactaactttgcggatgattctatata-acctacataatttcaattttaaat |
8028135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 51389237 - 51389295
Alignment:
| Q |
126 |
ttgtgttagactaactttggggatgactctataaagacctgcataatttcaattttaaat |
185 |
Q |
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||||||||||||||||||||| |||| |||||| ||||| ||||||||||||||||||| |
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| T |
51389237 |
ttgtgttagactaactttggg-atgattctatactgacctacataatttcaattttaaat |
51389295 |
T |
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