View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7654_high_1 (Length: 567)

Name: NF7654_high_1
Description: NF7654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7654_high_1
NF7654_high_1
[»] chr8 (1 HSPs)
chr8 (223-544)||(4927356-4927674)
[»] chr7 (3 HSPs)
chr7 (10-226)||(6933404-6933622)
chr7 (54-168)||(26038608-26038722)
chr7 (87-148)||(27029468-27029531)
[»] chr4 (4 HSPs)
chr4 (10-226)||(509465-509683)
chr4 (10-168)||(18088311-18088470)
chr4 (10-108)||(9072066-9072164)
chr4 (194-226)||(18088253-18088285)
[»] chr1 (3 HSPs)
chr1 (10-167)||(15758532-15758690)
chr1 (407-518)||(6398895-6399006)
chr1 (194-226)||(15758718-15758750)
[»] scaffold0002 (1 HSPs)
scaffold0002 (10-226)||(171143-171361)
[»] chr5 (2 HSPs)
chr5 (10-59)||(21547914-21547963)
chr5 (440-505)||(36263662-36263727)
[»] chr6 (1 HSPs)
chr6 (10-148)||(30234391-30234520)
[»] chr2 (1 HSPs)
chr2 (453-516)||(18641927-18641990)
[»] chr3 (1 HSPs)
chr3 (493-550)||(20937884-20937941)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 223 - 544
Target Start/End: Original strand, 4927356 - 4927674
Alignment:
Q  223 ttatctattgaatgatttgtgcatttttaagattgggcaaaagagaaaccattaaagagaattatgaagatacgacgaattcaatattttctgctaataa 322  Q
    ||||||||  ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || ||||||   ||||||||||||||||||||||    
T  4927356 ttatctatcaaatgatttgcgcatttttaagattaggcaaaagagaaaccattaaagagaattatcaaaatacga---attcaatattttctgctaataa 4927452  T
Q  323 attatgcgtcccctcaaaaaattaaacattaaacattaatgttaatcggacatgttaatgaatcattttttgattaaatattaatgttgtaaattcaaac 422  Q
     ||||  |||||||||||||||||| ||||||| |||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4927453 gttatttgtcccctcaaaaaattaaccattaaatattaatgtcaatcagacatgttaatgaatcatttttcgattaaatattaatgttgtaaattcaaac 4927552  T
Q  423 tcaaaactaacatcaataaacttagatgtatggaacaaatataaataacaatcaataatcagacagtctaaagcatcaacaacatatttagatctaatta 522  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||||     
T  4927553 tcaaaactaacatcaataaacttatatgtgtggaacaaatataaataacaatcaataatcaaacagtctaaagcaacaacagcatatctagatctaattg 4927652  T
Q  523 aacaatcaagtgtaaagtaaaa 544  Q
    ||||||||||||||||| ||||    
T  4927653 aacaatcaagtgtaaagcaaaa 4927674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 3e-65; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 6933404 - 6933622
Alignment:
Q  10 gtgttggttgtaagaggtgtgagtccgtttgtccgacggattttttaagtgtttgggtttatttatggcctgaaacaactcgaagtatgggtctagctta 109  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  6933404 gtgttggttgtaagaggtgtgagtccgcttgtccgacggatttcttaagtgttcgggtttatttagggcctgaaacaactcgaagtatgggtctagctta 6933503  T
Q  110 ttgatac-attcaaaaaacaccacacgaatacgtttttttaccggcaaaaagccgtgctcnnnnnnntattttgta-nnnnnnnnnagcacgggcttttc 207  Q
    |||||||  ||||||||||||||||||||||||||||||||| |||||||| ||||||||       |||||||||          ||||||||||||||    
T  6933504 ttgatacgtttcaaaaaacaccacacgaatacgtttttttactggcaaaaacccgtgctcaaaaaaatattttgtattttttttttagcacgggcttttc 6933603  T
Q  208 tggcccaagtgtatcttat 226  Q
    |||||||||||||||||||    
T  6933604 tggcccaagtgtatcttat 6933622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 168
Target Start/End: Complemental strand, 26038722 - 26038608
Alignment:
Q  54 ttaagtgtttgggtttatttatggcctgaaacaactcgaagtatgggtctagcttattgatacatt-caaaaaacaccacacgaatacgtttttttaccg 152  Q
    ||||||||| |||| |||||| ||||| |||||| |||||||||| |||||| |||||||||| || |||||| ||||||| ||||||||| |||||| |    
T  26038722 ttaagtgttcgggtatatttagggcctaaaacaattcgaagtatgagtctagtttattgatacgtttcaaaaagcaccacatgaatacgtt-ttttactg 26038624  T
Q  153 gcaaaaagccgtgctc 168  Q
    ||||||| ||||||||    
T  26038623 gcaaaaacccgtgctc 26038608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 27029531 - 27029468
Alignment:
Q  87 actcgaagtatgggtctagcttattgatacatt--caaaaaacaccacacgaatacgttttttt 148  Q
    ||||||||||||||| |||||||||||||  ||   |||||||||||||| |||||||||||||    
T  27029531 actcgaagtatgggtttagcttattgatatgtttcaaaaaaacaccacacaaatacgttttttt 27029468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 3e-65; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 509465 - 509683
Alignment:
Q  10 gtgttggttgtaagaggtgtgagtccgtttgtccgacggattttttaagtgtttgggtttatttatggcctgaaacaactcgaagtatgggtctagctta 109  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  509465 gtgttggttgtaagaggtgtgagtccgcttgtccgacggatttcttaagtgttcgggtttatttagggcctgaaacaactcgaagtatgggtctagctta 509564  T
Q  110 ttgatac-attcaaaaaacaccacacgaatacgtttttttaccggcaaaaagccgtgctcnnnnnnntattttgta-nnnnnnnnnagcacgggcttttc 207  Q
    |||||||  ||||||||||||||||||||||||||||||||| |||||||| ||||||||       |||||||||          ||||||||||||||    
T  509565 ttgatacgtttcaaaaaacaccacacgaatacgtttttttactggcaaaaacccgtgctcaaaaaaatattttgtatttttttttgagcacgggcttttc 509664  T
Q  208 tggcccaagtgtatcttat 226  Q
    |||||||||||||||||||    
T  509665 tggcccaagtgtatcttat 509683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 10 - 168
Target Start/End: Complemental strand, 18088470 - 18088311
Alignment:
Q  10 gtgttggttgtaagaggtgtgagtccgtttgtccgacggattttttaagtgtttgggtttatttatggcctgaaacaactcgaagtatgggtctagctta 109  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  18088470 gtgttggttgtaagaggtgtgagtccgcttgtccgacggatttcttaagtgttcgggtttatttagggcctgaaacaactcgaagtatgggtctagctta 18088371  T
Q  110 ttgatac-attcaaaaaacaccacacgaatacgtttttttaccggcaaaaagccgtgctc 168  Q
    |||||||  ||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  18088370 ttgatacgtttcaaaaaacaccacacgaatacgtttttttactggcaaaaacccgtgctc 18088311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 9072066 - 9072164
Alignment:
Q  10 gtgttggttgtaagaggtgtgagtccgtttgtccgacggattttttaagtgtttgggtttatttatggcctgaaacaactcgaagtatgggtctagctt 108  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  9072066 gtgttggttgtaagaggtgtgagtccgtttgtctgacggatttcttaagtgttcgggtttatttagggcctgaaacaactcgaagtatgggtctagctt 9072164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 18088285 - 18088253
Alignment:
Q  194 agcacgggcttttctggcccaagtgtatcttat 226  Q
    |||||||||||||||||||||||||||||||||    
T  18088285 agcacgggcttttctggcccaagtgtatcttat 18088253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 10 - 167
Target Start/End: Original strand, 15758532 - 15758690
Alignment:
Q  10 gtgttggttgtaagaggtgtgagtccgtttgtccgacggattttttaagtgtttgggtttatttatggcctgaaacaactcgaagtatgggtctagctta 109  Q
    ||||||||||||||||||||||||||| |||||||||||||||  |||||||| ||||||||||| ||||||||||||||||||||||  ||||||||||    
T  15758532 gtgttggttgtaagaggtgtgagtccgcttgtccgacggatttcataagtgttcgggtttatttagggcctgaaacaactcgaagtataagtctagctta 15758631  T
Q  110 ttgatac-attcaaaaaacaccacacgaatacgtttttttaccggcaaaaagccgtgct 167  Q
    |||||||  |||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  15758632 ttgatacgtttcaaaaaacaccacacggatacgtttttttactggcaaaaacccgtgct 15758690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 518
Target Start/End: Complemental strand, 6399006 - 6398895
Alignment:
Q  407 tgttgtaaattcaaactcaaaactaacatcaataaacttagatgtatggaacaaatataaataacaatcaataatcagacagtctaaagcatcaacaaca 506  Q
    |||||| |||||| ||||||| || |||| ||||||| ||||||  |||| ||| ||| |||  ||| |||||| || | ||||| ||||| ||||||||    
T  6399006 tgttgtgaattcagactcaaatctcacataaataaacatagatgcctggagcaagtatcaatggcaaccaataaccaaatagtctcaagcaacaacaaca 6398907  T
Q  507 tatttagatcta 518  Q
    ||| ||||||||    
T  6398906 tatctagatcta 6398895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 15758718 - 15758750
Alignment:
Q  194 agcacgggcttttctggcccaagtgtatcttat 226  Q
    ||||||||||||| |||||||||||||||||||    
T  15758718 agcacgggcttttttggcccaagtgtatcttat 15758750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 171143 - 171361
Alignment:
Q  10 gtgttggttgtaagaggtgtgagtccgtttgtccgacggattttttaagtgtttgggtttatttatggcctgaaacaactcgaagtatgggtctagctta 109  Q
    |||| ||||||||||| ||||| || |  || ||||| ||||||||||||||  | ||||||||| ||||||||||||||||||||||||||||||||||    
T  171143 gtgtgggttgtaagagatgtgaatctgcctgcccgacagattttttaagtgtccgcgtttatttagggcctgaaacaactcgaagtatgggtctagctta 171242  T
Q  110 ttgatac-attcaaaaaacaccacacgaatacgtttttttaccggcaaaaagccgtgctcnnnnnnntattttgta-nnnnnnnnnagcacgggcttttc 207  Q
    |||||||  ||||||||||||||||||||||||||||||||| |||||||| ||||||||       |||||||||          ||||||||||||||    
T  171243 ttgatacgtttcaaaaaacaccacacgaatacgtttttttactggcaaaaacccgtgctcaaaaaaatattttgtatttttttttgagcacgggcttttc 171342  T
Q  208 tggcccaagtgtatcttat 226  Q
    |||||||||||||||||||    
T  171343 tggcccaagtgtatcttat 171361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 21547914 - 21547963
Alignment:
Q  10 gtgttggttgtaagaggtgtgagtccgtttgtccgacggattttttaagt 59  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  21547914 gtgttggttgtaagaggtgtgagtccgcttgtccgacggatttcttaagt 21547963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 505
Target Start/End: Original strand, 36263662 - 36263727
Alignment:
Q  440 aaacttagatgtatggaacaaatataaataacaatcaataatcagacagtctaaagcatcaacaac 505  Q
    ||||||||||||||||||||||||||||   ||| || ||| || ||||||| ||||| |||||||    
T  36263662 aaacttagatgtatggaacaaatataaaaggcaaccattaaccaaacagtctcaagcaacaacaac 36263727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 30234520 - 30234391
Alignment:
Q  10 gtgttggttgtaagaggtgtgagtccgtttgtccgacggattttttaagtgtttgggtttatttatggcctgaaacaactcgaagtatgggtctagctta 109  Q
    |||||||||||||||||||||||||   || || |||  |||| ||||||||  | ||||||||| || ||||||||||||||||||        | |||    
T  30234520 gtgttggttgtaagaggtgtgagtctccttatcagacaaatttcttaagtgt--gagtttatttagggtctgaaacaactcgaagta--------gttta 30234431  T
Q  110 ttgatacatt-caaaaaacaccacacgaatacgttttttt 148  Q
    |||||||||| ||||||||||||||| |||||||||||||    
T  30234430 ttgatacatttcaaaaaacaccacacaaatacgttttttt 30234391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 516
Target Start/End: Complemental strand, 18641990 - 18641927
Alignment:
Q  453 tggaacaaatataaataacaatcaataatcagacagtctaaagcatcaacaacatatttagatc 516  Q
    ||||||||| || ||| |||||||||||||| ||||||| ||||| ||| ||||||| ||||||    
T  18641990 tggaacaaacatgaatgacaatcaataatcaaacagtctcaagcaacaaaaacatatctagatc 18641927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 550
Target Start/End: Complemental strand, 20937941 - 20937884
Alignment:
Q  493 aagcatcaacaacatatttagatctaattaaacaatcaagtgtaaagtaaaatcacaa 550  Q
    ||||| |||||||| || ||||||||||  |  |||||||||||||||||||||||||    
T  20937941 aagcagcaacaacaaatctagatctaatctattaatcaagtgtaaagtaaaatcacaa 20937884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University