View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7654_high_3 (Length: 373)
Name: NF7654_high_3
Description: NF7654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7654_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 99 - 300
Target Start/End: Original strand, 3435390 - 3435592
Alignment:
| Q |
99 |
atttgtgtgttctaagaaatgaaagtttacttagttttttaataacattnnnnnnntaaaggagccaacttcatttccaaaacgaatctttttacaa-aa |
197 |
Q |
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| T |
3435390 |
atttgtgtgttctaagagatgaaagtttacttagttttttaataacattaaaaaaataaaggagccaacttcatttccaaaacgaatctttttacaacaa |
3435489 |
T |
|
| Q |
198 |
cgatttcgtaatatatattttaaatgaaatctcaacattagttatttttgggataataaaaattggattaaagagagtataagagatactattgcgtgga |
297 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3435490 |
cgatttcgtaatatatattttaaatggaatctcaacattagttatttttgggataataaaaattggattaaagagagtataagagatactattgcatgga |
3435589 |
T |
|
| Q |
298 |
ata |
300 |
Q |
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||| |
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| T |
3435590 |
ata |
3435592 |
T |
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