View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7654_high_4 (Length: 283)
Name: NF7654_high_4
Description: NF7654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7654_high_4 |
 | |
|
| [»] scaffold0341 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 268
Target Start/End: Original strand, 6522194 - 6522445
Alignment:
| Q |
15 |
gtgcctgtgccagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtatttatggtggtttttgtatgtgtttttact |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6522194 |
gtgcctgtgccagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtatttatggtggtttttgtatgtgtttttact |
6522293 |
T |
|
| Q |
115 |
atatctttgatatattaaatatttaatgtctcactatgtgttaattctggtttttgcagataagggcaacacgtcaagaaatgtcgtccctgtaattttg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6522294 |
atatctttgatatattaaatatttaatgtctcac--tgtgttaattctggtttttgcagataagggcaacacgtcaagaaatgtcgtccctgtaattttg |
6522391 |
T |
|
| Q |
215 |
ttgatgatgattttattgtgttcattgttatcatctttttgatcaattaagaac |
268 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6522392 |
ttgatgttgattttattgtgttcattgttatcatctttttgatcaattaagaac |
6522445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 6506501 - 6506438
Alignment:
| Q |
25 |
cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
88 |
Q |
| |
|
|||||||||| |||||| |||||||||| |||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
6506501 |
cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
6506438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 526 - 463
Alignment:
| Q |
25 |
cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
88 |
Q |
| |
|
|||||||||| |||||| |||||||||| |||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
526 |
cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 8179 - 8116
Alignment:
| Q |
25 |
cagtgccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
88 |
Q |
| |
|
|||||||||| |||||| |||||||||| |||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
8179 |
cagtgccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
8116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University