View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7654_low_2 (Length: 440)

Name: NF7654_low_2
Description: NF7654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7654_low_2
NF7654_low_2
[»] chr2 (3 HSPs)
chr2 (19-432)||(41932072-41932477)
chr2 (26-94)||(40186436-40186504)
chr2 (97-166)||(40186536-40186605)
[»] chr1 (4 HSPs)
chr1 (26-180)||(32979609-32979764)
chr1 (63-184)||(24814662-24814783)
chr1 (103-181)||(26266034-26266112)
chr1 (132-187)||(43048876-43048931)
[»] chr8 (3 HSPs)
chr8 (26-184)||(29526269-29526427)
chr8 (125-187)||(44340530-44340591)
chr8 (121-182)||(24736214-24736274)
[»] chr7 (1 HSPs)
chr7 (34-167)||(21833990-21834123)
[»] chr3 (8 HSPs)
chr3 (24-186)||(47865798-47865960)
chr3 (26-181)||(26719253-26719405)
chr3 (122-188)||(28963953-28964019)
chr3 (118-184)||(46567056-46567122)
chr3 (42-184)||(35756427-35756569)
chr3 (26-187)||(31218396-31218558)
chr3 (103-181)||(26740772-26740850)
chr3 (24-72)||(8005140-8005188)
[»] scaffold0045 (2 HSPs)
scaffold0045 (26-182)||(65046-65202)
scaffold0045 (26-182)||(72378-72534)
[»] chr4 (9 HSPs)
chr4 (118-200)||(29152917-29152999)
chr4 (24-184)||(13492335-13492494)
chr4 (26-169)||(4427282-4427426)
chr4 (27-173)||(17261103-17261240)
chr4 (82-181)||(18632264-18632363)
chr4 (80-182)||(39228841-39228943)
chr4 (149-187)||(53967209-53967247)
chr4 (149-205)||(52975220-52975275)
chr4 (91-204)||(18822558-18822671)


Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Original strand, 41932072 - 41932477
Alignment:
Q  19 cgtttcacctccatcttcttgtactacatatttaattttagttgccaacattttatacaatatagtgttatgttaacgtaaatatattatgaaatctatt 118  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||         ||||||||  ||||||||||||||||||||||    
T  41932072 cgttccacctccatcttcttgtactacatatttaattttagttgccaacattttgtaca---------tatgttaatataaatatattatgaaatctatt 41932162  T
Q  119 tcaattaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaataaattttgctgaactaataaattaaacgccataaaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41932163 tcaattaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaataaattttgctgaactaataaattaaacgccat-aaa 41932261  T
Q  219 taattcattcagagaacgtgtgagaatcgtgaaagcgtgagaactataaacatataaaaagaaattctcaatattatttgcaagagataa--atagagaa 316  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||    
T  41932262 taatctattcagagaacgtgtgagaatcgtgaaagcgtgagaactataaacatataaaaagaaattctgaatattatttgcaagagataaatatagagaa 41932361  T
Q  317 caaagtggtccatcaccaaaccatacatactattactggtgggccctaaattgaaagtagaaaaacaaaaattctttaaagggacatacaagggatatca 416  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41932362 caaagtggtccatcaccaaactatacatactattactggtgggccctaaattgaaagtagaaaaacaaaaattctttaaagggacatacaagggatatca 41932461  T
Q  417 caccaccgagtattat 432  Q
    ||||||||||||||||    
T  41932462 caccaccgagtattat 41932477  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 40186436 - 40186504
Alignment:
Q  26 cctccatcttcttgtactacatatttaattttagttgccaacattttatacaatatagtgttatgttaa 94  Q
    ||||||||||||||| |||||  |||||||||||||||||| ||||| ||| | | |||||||||||||    
T  40186436 cctccatcttcttgtgctacaagtttaattttagttgccaatattttgtactacacagtgttatgttaa 40186504  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 40186536 - 40186605
Alignment:
Q  97 taaatatattatgaaatctatttcaattaataaaatgtgttgagttattaatttttgttgtcaattttaa 166  Q
    ||||| |||| |||||||  ||||||||||||||||||  | | ||||||| ||||||||||||||||||    
T  40186536 taaatgtattttgaaatcattttcaattaataaaatgttattaattattaaattttgttgtcaattttaa 40186605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 26 - 180
Target Start/End: Complemental strand, 32979764 - 32979609
Alignment:
Q  26 cctccatcttcttgtactacatatttaattttagttgcca-acattttatacaatatagtgttatgttaacgtaaatatattatgaaatctatttcaatt 124  Q
    ||||||||||||||| ||||| |||||||| ||||||||| ||||||| ||| | ||||||||||||||| | |||| ||||||||||||   ||||| |    
T  32979764 cctccatcttcttgtgctacagatttaattctagttgccacacattttgtactacatagtgttatgttaatgcaaatgtattatgaaatcatgttcaaat 32979665  T
Q  125 aataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcatttta 180  Q
    ||||||||||| ||| ||||||| || |||||| ||||||||||||||||||||||    
T  32979664 aataaaatgtgatgaattattaaattatgttgtaaattttaaattatgtcatttta 32979609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 184
Target Start/End: Original strand, 24814662 - 24814783
Alignment:
Q  63 ccaacattttatacaatatagtgttatgttaacgtaaatatattatgaaatctatttcaattaataaaatgtgttgagttattaatttttgttgtcaatt 162  Q
    |||| ||||||||| |  |||||||||||||| ||||||  |||||| ||||   |||||| ||||||||||| | | ||||||| ||||||||||| ||    
T  24814662 ccaatattttatactacttagtgttatgttaatgtaaatgcattatggaatcatgttcaatcaataaaatgtgataaattattaaattttgttgtcagtt 24814761  T
Q  163 ttaaattatgtcattttaataa 184  Q
    ||||||||| || |||||||||    
T  24814762 ttaaattatatctttttaataa 24814783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 26266034 - 26266112
Alignment:
Q  103 tattatgaaatctatttcaattaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaa 181  Q
    ||||| |||||||  ||||| ||||||| |||||||| ||| ||| ||||| ||||||||||||||||| |||||||||    
T  26266034 tattacgaaatcttgttcaactaataaattgtgttgaattaataaattttgctgtcaattttaaattatatcattttaa 26266112  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 43048876 - 43048931
Alignment:
Q  132 tgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaataaatt 187  Q
    |||||||| |||  || ||||||||||||||| |||| ||||||||||||||||||    
T  43048876 tgtgttgaattaacaaattttgttgtcaatttcaaatcatgtcattttaataaatt 43048931  T

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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 29526427 - 29526269
Alignment:
Q  26 cctccatcttcttgtactacatatttaattttagttgccaacattttatacaatatagtgttatgttaacgtaaatatattatgaaatctatttcaatta 125  Q
    |||||||||  |||| ||||| |||||||||||||||  |||||||||||| | ||||||||||| ||| ||||||||||||||| ||| ||||||||||    
T  29526427 cctccatctgtttgtgctacaaatttaattttagttgtgaacattttatactacatagtgttatgctaatgtaaatatattatgacatc-atttcaatta 29526329  T
Q  126 ataaaatgtgttgagttattaatttttgttgtcaattttaaatt--atgtcattttaataa 184  Q
    |||||||||| ||| |||| || |||||||||| ||||||||||  || ||||||||||||    
T  29526328 ataaaatgtgatgaattataaaattttgttgtc-attttaaattagatatcattttaataa 29526269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 44340530 - 44340591
Alignment:
Q  125 aataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaataaatt 187  Q
    ||||||| ||| ||| ||||||| |||||||||||| |||| ||||||||||||| |||||||    
T  44340530 aataaaacgtgatgaattattaaattttgttgtcaa-tttatattatgtcattttgataaatt 44340591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 24736214 - 24736274
Alignment:
Q  121 aattaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaat 182  Q
    ||||||||||||||||||| ||||||| ||| |||||| | ||||| |||||||||| ||||    
T  24736214 aattaataaaatgtgttgaattattaaatttggttgtc-actttaagttatgtcattataat 24736274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 21834123 - 21833990
Alignment:
Q  34 ttcttgtactacatatttaattttagttgccaacattttatacaatatagtgttatgttaacgtaaatatattatg-aaatctatttcaattaataaaat 132  Q
    ||||| ||||||||||||| ||||||||||||| ||||| ||| | |||||||||||||||| ||||| ||||||| |||| || |||||||||||||||    
T  21834123 ttcttttactacatatttagttttagttgccaatattttttactagatagtgttatgttaacataaatgtattatgaaaatata-ttcaattaataaaat 21834025  T
Q  133 gtgttgagttattaatttttgttgtcaattttaaa 167  Q
    ||| ||| ||||||| |||| ||||||||||||||    
T  21834024 gtgatgaattattaaattttcttgtcaattttaaa 21833990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 186
Target Start/End: Original strand, 47865798 - 47865960
Alignment:
Q  24 cacctccatcttcttgtactacatatttaattttagttgccaacattttatacaatatagtgttatgttaacgtaaatatattatgaaatctatttcaat 123  Q
    ||||| |||||||||||||| |||||||| |||||||||| ||| |||| ||    |||||||  ||| ||||||||||||||| ||||||   ||||||    
T  47865798 caccttcatcttcttgtacttcatatttagttttagttgctaaccttttgtaatgcatagtgtcgtgtcaacgtaaatatattacgaaatcatgttcaat 47865897  T
Q  124 taataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaataaat 186  Q
    |||||||||||| ||| ||  ||| |||||||||||||| ||||||| |||||||||||||||    
T  47865898 taataaaatgtgatgaattgataaattttgttgtcaattataaattacgtcattttaataaat 47865960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 26 - 181
Target Start/End: Complemental strand, 26719405 - 26719253
Alignment:
Q  26 cctccatcttcttgtactacatatttaattttagttgccaa-cattttatacaatatagtgttatgttaacgtaaatatattatgaaatctatttcaatt 124  Q
    |||||||||||||||| |||| |||||  ||| | || ||| |||||| |||||  |||||||||||||| ||     |||||| |||||  ||| ||||    
T  26719405 cctccatcttcttgtattacaaatttagcttttgatgtcaaacattttgtacaaattagtgttatgttaatgtg----tattataaaatccttttgaatt 26719310  T
Q  125 aataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaa 181  Q
    ||||||||||||||| ||||||| |||  |||||| ||||| |||||||||||||||    
T  26719309 aataaaatgtgttgaattattaaatttcattgtcagttttatattatgtcattttaa 26719253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 28964019 - 28963953
Alignment:
Q  122 attaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaataaattt 188  Q
    ||||||||| |||||||| ||| ||| |||||||||| |||||||||||| ||||||||||||||||    
T  28964019 attaataaattgtgttgaattaataaattttgttgtccattttaaattatatcattttaataaattt 28963953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 46567056 - 46567122
Alignment:
Q  118 ttcaattaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaataa 184  Q
    |||||||||||||||||| ||| ||||||| |||| ||||||||||||||| |||| ||||||||||    
T  46567056 ttcaattaataaaatgtgatgatttattaaattttattgtcaattttaaataatgtgattttaataa 46567122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 184
Target Start/End: Complemental strand, 35756569 - 35756427
Alignment:
Q  42 ctacatatttaattttagttgccaacattttatacaatatagtgttatgttaacgtaaatatattatgaaatctat-ttcaattaataaaatgtgttgag 140  Q
    ||||||||||  ||||||||||||||||||||||  | | |||||| || ||| ||| || | ||||||||| ||| |||| ||| ||||||||| | |     
T  35756569 ctacatatttcgttttagttgccaacattttatagtacacagtgttgtgataatgtatatgtgttatgaaat-tatgttcatttactaaaatgtgataaa 35756471  T
Q  141 ttattaatttttgttgtcaattttaaattatgtcattttaataa 184  Q
    ||||||| |||| |||||||||||||| ||| ||||| ||||||    
T  35756470 ttattaagttttattgtcaattttaaaatatatcattataataa 35756427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 187
Target Start/End: Original strand, 31218396 - 31218558
Alignment:
Q  26 cctccatcttcttgtactacatatttaattttagttgccaa-cattttatacaatatagtgttatgttaacgtaaatatattatgaaatctatttcaatt 124  Q
    |||||||||||||| ||||||||||||| |||| ||||||| |||||| ||| | ||||  ||| | ||  |||||| | ||||||||||   ||  |||    
T  31218396 cctccatcttcttggactacatatttaactttaattgccaaacattttctactacatagcattacggtattgtaaatgtgttatgaaatcatgtttgatt 31218495  T
Q  125 aataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaataaatt 187  Q
    |||||| |  | | | ||||||| |||| |||||||||||||||| |||| ||||||||||||    
T  31218496 aataaattaggctcaattattaaatttttttgtcaattttaaattttgtccttttaataaatt 31218558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 181
Target Start/End: Complemental strand, 26740850 - 26740772
Alignment:
Q  103 tattatgaaatctatttcaattaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaa 181  Q
    |||||| |||||  ||||||||||||||||||||||| ||||||| |||  ||||| ||||||  |||||||| |||||    
T  26740850 tattataaaatccttttcaattaataaaatgtgttgaattattaaatttcattgtcgattttatgttatgtcaatttaa 26740772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 8005188 - 8005140
Alignment:
Q  24 cacctccatcttcttgtactacatatttaattttagttgccaacatttt 72  Q
    ||||||||||||||||| |||||||||   ||||||||||||| |||||    
T  8005188 cacctccatcttcttgtgctacatattcggttttagttgccaatatttt 8005140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 65046 - 65202
Alignment:
Q  26 cctccatcttcttgtactacatatttaattttagttgccaa-cattttatacaatatagtgttatgttaacgtaaatatattatgaaatctatttcaatt 124  Q
    |||||||| |||| |||||||||||||| |||||||| ||| |||||| ||| | ||   |||||||||  |||||| ||||||| | |||  |||||||    
T  65046 cctccatcatcttatactacatatttaactttagttgacaaacattttgtactaaatcccgttatgttattgtaaatgtattatgta-tcttgttcaatt 65144  T
Q  125 aataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaat 182  Q
    |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  65145 aataaattgtgttgaattattaaattttgttgtcaattttaaattatgtcattttaat 65202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 72378 - 72534
Alignment:
Q  26 cctccatcttcttgtactacatatttaattttagttgccaa-cattttatacaatatagtgttatgttaacgtaaatatattatgaaatctatttcaatt 124  Q
    |||||||| |||| |||||||||||||| |||||||| ||| |||||| ||| | ||   |||||||||  |||||| ||||||| | |||  |||||||    
T  72378 cctccatcatcttatactacatatttaactttagttgacaaacattttgtactaaatcccgttatgttattgtaaatgtattatgta-tcttgttcaatt 72476  T
Q  125 aataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaat 182  Q
    |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  72477 aataaattgtgttgaattattaaattttgttgtcaattttaaattatgtcattttaat 72534  T

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Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 118 - 200
Target Start/End: Original strand, 29152917 - 29152999
Alignment:
Q  118 ttcaattaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaataaattttgctgaactaat 200  Q
    ||||||||||  |||||| ||| ||||||| |||||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  29152917 ttcaattaatttaatgtgatgaattattaaattttgtttacaattttaaattatgtcattttaataaattttgttgaactaat 29152999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 13492335 - 13492494
Alignment:
Q  24 cacctccatcttcttgtactacatatttaattttagttgccaacattttatacaatatagtgttatgttaacgtaaatatattatgaaatctat-ttcaa 122  Q
    ||||||||||||| ||| ||| |  |||| ||||||||||||| | ||||||| |  | |||||||| ||| ||||||  ||||| |||| ||| |||||    
T  13492335 cacctccatcttcctgtgctagaggtttagttttagttgccaataatttatactacttggtgttatgctaatgtaaatgcattataaaat-tatgttcaa 13492433  T
Q  123 ttaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaataa 184  Q
    | ||||||||||| | | ||||||| ||| ||||||||||||||||||||||||||||||||    
T  13492434 tcaataaaatgtgataaattattaaattt-gttgtcaattttaaattatgtcattttaataa 13492494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 4427282 - 4427426
Alignment:
Q  26 cctccatcttcttgtactacatatttaattttagttgccaa-cattttatacaatatagtgttatgttaacgtaaatatattatgaaatctat-ttcaat 123  Q
    |||||| |||||||| ||||| ||||| ||||||| | ||| |||||| ||| || || | ||||||||| ||| ||||||| |||||| ||| |||  |    
T  4427282 cctccaccttcttgtgctacaaatttagttttagtcgtcaaacattttgtactatctaattttatgttaatgtagatatattttgaaat-tatgttcgct 4427380  T
Q  124 taataaaatgtgttgagttattaatttttgttgtcaattttaaatt 169  Q
    ||||||||| || |||  |||||| |||||||||||||||||||||    
T  4427381 taataaaatctgatgaactattaaattttgttgtcaattttaaatt 4427426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 173
Target Start/End: Original strand, 17261103 - 17261240
Alignment:
Q  27 ctccatcttcttgtactacatatttaattttagttgccaacattttatacaatatagtgttatgttaacgtaaatatattatgaaatctatttcaattaa 126  Q
    |||||| ||||||| ||||| || || ||||||||| |||| |||| ||| | ||||||||||||||| |||||| |||||||        |||||| ||    
T  17261103 ctccatattcttgtgctacaaatatagttttagttgtcaactttttgtactacatagtgttatgttaatgtaaatgtattatg--------ttcaataaa 17261194  T
Q  127 taaaatgtgttgagttattaatttttgttgtcaattttaaattatgt 173  Q
    |||||| || ||| ||||||| ||||||| | |||||||||||||||    
T  17261195 taaaatatgctgaattattaaattttgttat-aattttaaattatgt 17261240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 181
Target Start/End: Original strand, 18632264 - 18632363
Alignment:
Q  82 agtgttatgttaacgtaaatatattatgaaatctatttcaattaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaa 181  Q
    ||||||| ||||  ||||||||| ||| || |||  || ||||||||||||||||||  ||||||| |||| |||||||||||| || |||||| |||||    
T  18632264 agtgttaagttattgtaaatataatataaattcttctttaattaataaaatgtgttgtattattaaattttattgtcaattttatatcatgtcactttaa 18632363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 39228943 - 39228841
Alignment:
Q  80 atagtgttatgttaacgtaaatatattatgaaat-ctatttcaattaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattt 178  Q
    |||| |||||| ||| ||||| ||||||| |||| ||||| ||||||||||| |||||||| ||  ||| ||||||||| ||||||| ||||||||| ||    
T  39228943 atagagttatgctaatgtaaacatattataaaattctatt-caattaataaattgtgttgaatttataaattttgttgtaaattttatattatgtcactt 39228845  T
Q  179 taat 182  Q
    ||||    
T  39228844 taat 39228841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 53967209 - 53967247
Alignment:
Q  149 ttttgttgtcaattttaaattatgtcattttaataaatt 187  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  53967209 ttttgttgacaattttaaattatgtcattttaataaatt 53967247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 52975275 - 52975220
Alignment:
Q  149 ttttgttgtcaattttaaattatgtcattttaataaattttgctgaactaataaatt 205  Q
    ||||||||||||||||||||||||| ||||||||| ||| || |||| |||||||||    
T  52975275 ttttgttgtcaattttaaattatgt-attttaatatattatgttgaattaataaatt 52975220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 204
Target Start/End: Complemental strand, 18822671 - 18822558
Alignment:
Q  91 ttaacgtaaatatattatgaaatctatttcaattaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaataaattttg 190  Q
    |||| |||||| |||||||||||    ||||||||||||| ||  |||| ||| | | |||  ||||||||| |||||||||||||||||  ||||  ||    
T  18822671 ttaatgtaaatgtattatgaaattgtgttcaattaataaattgcattgaattaatcaatttgattgtcaattataaattatgtcattttagcaaatcatg 18822572  T
Q  191 ctgaactaataaat 204  Q
     |||||||||||||    
T  18822571 ttgaactaataaat 18822558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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