View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7654_low_4 (Length: 293)
Name: NF7654_low_4
Description: NF7654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7654_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 32866670 - 32866934
Alignment:
| Q |
10 |
attattctcacagcggcggcaacattcacatgcttgtaatcgtaaaatctccacagccaaatccaaccgaatacatagaaacaaatttgaactgtacctt |
109 |
Q |
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| T |
32866670 |
attatactcacagcggcggcaacattcacatgcttgtaatcgtaaaatctccacagccaaatccaaccgaatacatagaaacaaatctgaactgtacctt |
32866769 |
T |
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| Q |
110 |
nnnnnnngtgaacataaaatatacatattctctacctagtggataacgtttgaacttt-atcaaacaaacaaactagaatgaaatcaaataaaaatgcta |
208 |
Q |
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| T |
32866770 |
aaaaaaagtgaacataaaatatacatattctctacctagtggataacgtttgaactttgatcaaacaaacaaactagaatgaaatcaaataaaaatgcta |
32866869 |
T |
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| Q |
209 |
ccataacatatcataatagagtaattaactaaaatttcaattcataatttaagattaattgcagaaac |
276 |
Q |
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| T |
32866870 |
ccataacatatc---atagagtaattaactaaaatttcaattcataatttaagattaattgcagaaac |
32866934 |
T |
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