View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7655_high_1 (Length: 623)

Name: NF7655_high_1
Description: NF7655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7655_high_1
NF7655_high_1
[»] chr4 (3 HSPs)
chr4 (450-612)||(17559831-17560000)
chr4 (314-575)||(50227635-50227901)
chr4 (483-575)||(36893011-36893103)
[»] chr1 (2 HSPs)
chr1 (438-575)||(40979968-40980107)
chr1 (508-575)||(24967779-24967846)
[»] chr2 (1 HSPs)
chr2 (438-575)||(26451309-26451448)
[»] chr3 (1 HSPs)
chr3 (26-141)||(29137025-29137141)
[»] scaffold0188 (1 HSPs)
scaffold0188 (26-141)||(30458-30574)
[»] chr5 (1 HSPs)
chr5 (515-575)||(19535304-19535364)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 7e-66; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 450 - 612
Target Start/End: Complemental strand, 17560000 - 17559831
Alignment:
Q  450 ttactaatgtgttaggattcaacaaaagttcttgctctttgttattaaagatatgcaacccctaaaagttttgaaagtctgcatctcttttataactatc 549  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  17560000 ttactaatgtgttaggattcaacaaaagttcttgctctttgttattaaagatatgcaacccctaaaagttttgaaagtgtgcatctcttttatatctatc 17559901  T
Q  550 ctgattcaacaaaaaattg-------aaaaagttatatagcctgttccattagcatgctcagcacaggtt 612  Q
    |||||||||||||||||||       ||||||| ||||||||||||||||||||||||||||| ||||||    
T  17559900 ctgattcaacaaaaaattgaaaattgaaaaagtcatatagcctgttccattagcatgctcagcgcaggtt 17559831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 314 - 575
Target Start/End: Complemental strand, 50227901 - 50227635
Alignment:
Q  314 ttgctttttatagtggtgttatttcttgctaggaaaaaattggggtaataataatga---acttttaaaatttcggcctttaaatcaaaatctctaaact 410  Q
    ||||||||||||| |||||| |||||||| |   ||||||||| |||||||||||||   |||||||||||||| || ||||||||||||||||||||||    
T  50227901 ttgctttttataggggtgttgtttcttgccaaccaaaaattggtgtaataataatgatgaacttttaaaatttcagcttttaaatcaaaatctctaaact 50227802  T
Q  411 -tagtcaacactggaagcttaagtagaggaatgtagtgcattactaatgtgttaggattcaacaaaagt--tcttgctctttg-ttattaaagatatgca 506  Q
     |||| ||||||||||||| ||| | |||||||||  ||||| ||||||||||||||||||   | | |  | |||||||  | || |||||||||||||    
T  50227801 atagttaacactggaagctcaaggaaaggaatgta--gcattgctaatgtgttaggattcattcatattcatattgctctccgttttttaaagatatgca 50227704  T
Q  507 acccctaaaagttttgaaagtctgcatctcttttataactatcctgattcaacaaaaaattgaaaaagt 575  Q
     | || ||||||||||||||| |||||||  |||||| ||||||| ||||| | ||||| |||||||||    
T  50227703 tctccaaaaagttttgaaagtgtgcatctgatttatatctatcctaattcacccaaaaaatgaaaaagt 50227635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 483 - 575
Target Start/End: Original strand, 36893011 - 36893103
Alignment:
Q  483 gctctttgttattaaagatatgcaacccctaaaagttttgaaagtctgcatctcttttataactatcctgattcaacaaaaaattgaaaaagt 575  Q
    |||||||| | ||||||||||| | |||||||||||||||||||| ||||| | ||||||| || |||| ||||| |||||||||||| ||||    
T  36893011 gctctttgcttttaaagatatgaatcccctaaaagttttgaaagtgtgcatgtgttttatatctgtcctaattcaccaaaaaattgaagaagt 36893103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 438 - 575
Target Start/End: Complemental strand, 40980107 - 40979968
Alignment:
Q  438 gaatgtagtgcattactaatgtgttaggattcaacaaaagt--tcttgctctttgttattaaagatatgcaacccctaaaagttttgaaagtctgcatct 535  Q
    |||||||||||||||||||||||||||||||||   | | |  | |||||||||| | ||||||||||||| |||||||||||||||||||| |||||||    
T  40980107 gaatgtagtgcattactaatgtgttaggattcattcatattcatattgctctttgcttttaaagatatgcatcccctaaaagttttgaaagtgtgcatct 40980008  T
Q  536 cttttataactatcctgattcaacaaaaaattgaaaaagt 575  Q
     ||||||| || |||| ||||| |||||||||||| ||||    
T  40980007 gttttatatctgtcctaattcaccaaaaaattgaagaagt 40979968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 508 - 575
Target Start/End: Complemental strand, 24967846 - 24967779
Alignment:
Q  508 cccctaaaagttttgaaagtctgcatctcttttataactatcctgattcaacaaaaaattgaaaaagt 575  Q
    |||||||||||||| ||||| ||||| | ||||||| ||||||| ||||| ||| |||||||||||||    
T  24967846 cccctaaaagttttaaaagtgtgcatttattttatatctatcctaattcaccaacaaattgaaaaagt 24967779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 438 - 575
Target Start/End: Original strand, 26451309 - 26451448
Alignment:
Q  438 gaatgtagtgcattactaatgtgttaggattcaacaaaagt--tcttgctctttgttattaaagatatgcaacccctaaaagttttgaaagtctgcatct 535  Q
    |||||||||||||| ||||||||||||||||||   | | |  | |||||||||| | ||||||||||||| |||||||||||||||||||| |||||||    
T  26451309 gaatgtagtgcatttctaatgtgttaggattcattcatactcatattgctctttgcttttaaagatatgcatcccctaaaagttttgaaagtgtgcatct 26451408  T
Q  536 cttttataactatcctgattcaacaaaaaattgaaaaagt 575  Q
     ||||||| || |||| ||||| |||||||||||| ||||    
T  26451409 gttttatatctgtcctaattcaccaaaaaattgaagaagt 26451448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 29137025 - 29137141
Alignment:
Q  26 ctataagctaattagcattgtcttaagtttacgtaagtattaaacaacactatca-ctgttgaagttaaagcatatttctcatgaatcattgagttcttc 124  Q
    ||||||||||||||||||||||||| ||||| ||||||| |||||||| |  |||  ||| ||||||||| |||||||| ||   |||||||||||||||    
T  29137025 ctataagctaattagcattgtcttaggtttaagtaagtaataaacaacgccgtcatttgtagaagttaaaacatatttcccacagatcattgagttcttc 29137124  T
Q  125 agcatacaaataggttt 141  Q
     || | |||||||||||    
T  29137125 tgcttgcaaataggttt 29137141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 30574 - 30458
Alignment:
Q  26 ctataagctaattagcattgtcttaagtttacgtaagtattaaacaacactatca-ctgttgaagttaaagcatatttctcatgaatcattgagttcttc 124  Q
    ||||||||||||||| ||||||||| ||||| ||||||| |||||||| |  |||  ||| ||||||||| |||||||| ||   |||||||||||||||    
T  30574 ctataagctaattagtattgtcttaggtttaagtaagtaataaacaacgccgtcatttgtagaagttaaaacatatttcccacagatcattgagttcttc 30475  T
Q  125 agcatacaaataggttt 141  Q
     || | |||||||||||    
T  30474 tgcttgcaaataggttt 30458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 515 - 575
Target Start/End: Complemental strand, 19535364 - 19535304
Alignment:
Q  515 aagttttgaaagtctgcatctcttttataactatcctgattcaacaaaaaattgaaaaagt 575  Q
    ||||||||||||||||||| | ||||||| ||||| | ||| | ||| |||||||||||||    
T  19535364 aagttttgaaagtctgcatttattttatatctatcgtaattgaccaacaaattgaaaaagt 19535304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University