View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7656_high_2 (Length: 464)
Name: NF7656_high_2
Description: NF7656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7656_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 102 - 447
Target Start/End: Complemental strand, 40402661 - 40402314
Alignment:
| Q |
102 |
ttaaaatttatgttaattatctatgagcaatattgtgttcgagttagttaattatttttagctaatagtattggtgtttctacacctcgtttaatcagga |
201 |
Q |
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| T |
40402661 |
ttaaaatctgtgttaattatctatgagcaatattctgttcgagttagttaattatttttagctaatagtattgatgtttctacacctcgtttaattagga |
40402562 |
T |
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| Q |
202 |
gttagttt-ctgctttgggcttaaactctcttgttctccnnnnnnnnnnnnnnnnncaatgttgatagaggagctcattaaatttagtgctagccaacta |
300 |
Q |
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|||||||| | ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40402561 |
gttagttttccgctttgggcttaaactctcatgttctccaaaaaaaaaaaaaaaaacaatgttgatagaggagctcattaaatttagtgcgagccaacta |
40402462 |
T |
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| Q |
301 |
cttcgagatttggattagttgtcacttcaatggggtttaaggtggtacgacggtgagg-aaatgcaccactaacaccgtggctacatcttgttgaatagt |
399 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
40402461 |
cttcgagatttggattatttgtcacttcaatggggtttaaggtggtacgacggtgaggaaaatgcaccactaacaccgtggctacatcttgctgaatagt |
40402362 |
T |
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| Q |
400 |
gtttggatgatgtgggagaacaagagcttggtggtgacggcagtttgt |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40402361 |
gtttggatgatgtgggagaacaagagcttggtggtgacggcagtttgt |
40402314 |
T |
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