View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7656_high_4 (Length: 374)
Name: NF7656_high_4
Description: NF7656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7656_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 357
Target Start/End: Original strand, 30349218 - 30349562
Alignment:
| Q |
13 |
aatatttgcctcaaaccatttaatatagttctaaaatggacaagagatacttgaaccagatgggagagaggtgcacgtaggataagtggccaactctgtt |
112 |
Q |
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| T |
30349218 |
aatatttgcctcaaaccatttaatatagttctaaaatggacaagagatacttgaaccagatgggagagaggtgcacgtaggataagtggccaactctgtt |
30349317 |
T |
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| Q |
113 |
cctgtttgtcacgtcagtaacataccaaacgcgtgtgtttttataacggaatgtatgaaaaaggatagtggtgcatatggaatggaacttaaaggaccta |
212 |
Q |
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| T |
30349318 |
cctgtttgtcacgtcagtaacataccaaacgcgtgtgtttttataacagaatgtatgaaaaaggatagtggtgcatatggaatggaacttaaaggaccta |
30349417 |
T |
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| Q |
213 |
tgtgggacaaaaaactcaaacgactcatctagtacaaagaaacaatttaaaggacttcaggatacttacctacgaacatagtctggtccagctgaaagca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30349418 |
tgtgggacaaaaaactcaaacgactcatctagtacaaagaaacaatttaaaggacttcaggatacttacctacgaacataatctggtccagctgaaagca |
30349517 |
T |
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| Q |
313 |
agcggccgaaaaacgaaaaggatgcatagagagtaacaagggaag |
357 |
Q |
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| T |
30349518 |
agcggccgaaaaacgaaaaggatgcatagagagtaacaagggaag |
30349562 |
T |
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