View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7656_high_5 (Length: 363)
Name: NF7656_high_5
Description: NF7656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7656_high_5 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 4141705 - 4142067
Alignment:
| Q |
1 |
agaaccatataatgcaatgcataattgtgaaatatatcaaatgtaatgtatgacgagagaacaaaaacctgtaacaaagaaataatataaatgaaaatga |
100 |
Q |
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| T |
4141705 |
agaaccatataatgcaatgcataattgtgaaatatatcaaatgtaacgtatgacgagagaacaaaaacctgtaacaaagaaataatataaatgaaaatga |
4141804 |
T |
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| Q |
101 |
cagcaatttctgaagatgcaaaaccattcgacaattaattaataatccaagaagtaacatgtaacctttcatgggaaataatcctatgctcaagtgacat |
200 |
Q |
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| T |
4141805 |
cagcaatttctgaagatgcaaaaccattcgacaattaattaataatccaagaaataacatgtaacctttcatgggaaataatcctatgctcaagtgacat |
4141904 |
T |
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| Q |
201 |
agcactacatctatattctagcatagagaactaggtgatattaaactttcaacacagacttcaggaattcgtttaaaattagtagccttgaaagtacccg |
300 |
Q |
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| T |
4141905 |
agcactacatctatattctagcatagagaactaggtgatattaaactttcaacacagacttcaggaattcgtttaaaattagtagccttgaaagtacccc |
4142004 |
T |
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| Q |
301 |
tcctgggattgtaaagaatcaaattcaagtcaaaatcatacttcagcaacacttgatcatcct |
363 |
Q |
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| T |
4142005 |
tcctgggattgtaaagaatcaaattcaagtcaaaatcatacttcagcaacacttgatcatcct |
4142067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 158 - 363
Target Start/End: Original strand, 4157675 - 4157877
Alignment:
| Q |
158 |
catgtaacctttcatgggaaataatcctatgctcaagtgacatagcactacatctatattctagcatagagaactaggtgatattaaactttcaacacag |
257 |
Q |
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| T |
4157675 |
catgtaacctttc-tgggaaataatcctatgctcaagtgaca--gcactacatctacatccta---tagagaactaggtgatattaaactttcaatacat |
4157768 |
T |
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| Q |
258 |
acttcaggaattcgtttaaaattagtagccttgaaagtacccgtcctgggattgtaaagaatcaaattcaagtcaaaatcat---acttcagcaacactt |
354 |
Q |
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| T |
4157769 |
acttcaggaattagtttaaaattagtagccttcaaagtgccgctcctggggttgtaaaggaccaaattcaagtcagaatcatacaactccagcaacactt |
4157868 |
T |
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| Q |
355 |
gatcatcct |
363 |
Q |
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| T |
4157869 |
gatcatcct |
4157877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 192 - 363
Target Start/End: Complemental strand, 3754895 - 3754718
Alignment:
| Q |
192 |
aagtgacatagcactacatctatattctagcatagagaactaggtgatattaaactttcaacacagacttcaggaattcgtttaaaattagtagccttga |
291 |
Q |
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| T |
3754895 |
aagtgacatagcaccacatctacatcctagcatagagaagatggtgatattaaactttcaccacagacttctggagtatatttaaagttaatagccttca |
3754796 |
T |
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| Q |
292 |
aagtacccgtcctgggattgtaaagaatcaaattcaagtcaaaatcat------acttcagcaacacttgatcatcct |
363 |
Q |
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| T |
3754795 |
aggtaccgctcctggggttgtaaagaaccaaattcaagtcaatatcattcataaacttcagcaacacttgatcatcct |
3754718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 3755085 - 3754937
Alignment:
| Q |
18 |
tgcataattgtgaaatatatcaaatgtaatgtatgacgagagaacaaaaacctg-taacaaagaaataatataaatgaaaatgacagcaatttctgaaga |
116 |
Q |
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|||| ||||||||| ||||||||||||||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||||| | ||||||||| |
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| T |
3755085 |
tgcaaaattgtgaactatatcaaatgtaatgtatga---gagaaaaaaaaccaaataacaaacaaataatataaatgaaaatgacagaagtttctgaagc |
3754989 |
T |
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| Q |
117 |
tgcaa----aaccattcgacaattaattaataatccaagaagtaacatgtaa |
164 |
Q |
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| T |
3754988 |
tgcaatatcattcattcgtccattaattaataatccatgaaataacatgtaa |
3754937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 1889345 - 1889409
Alignment:
| Q |
189 |
ctcaagtgacatagcactacatctatattctagcatagagaactaggtgatattaaactttcaac |
253 |
Q |
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| T |
1889345 |
ctcaagtgacatagcaccacatctacattctagcattaagaacaaggtgatatcaaactctcaac |
1889409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 1890811 - 1890875
Alignment:
| Q |
189 |
ctcaagtgacatagcactacatctatattctagcatagagaactaggtgatattaaactttcaac |
253 |
Q |
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| T |
1890811 |
ctcaagtgacatagtaccacatctacattctagcattaagaacaaggcgatatcaaactctcaac |
1890875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 3746261 - 3746197
Alignment:
| Q |
234 |
ggtgatattaaactttcaacacagacttcaggaattcgtttaaaattagtagccttgaaagtacc |
298 |
Q |
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| T |
3746261 |
ggtgatattaaactctcaacacagacttctggaacttttctaaaatcagtagacttcaaagtacc |
3746197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 11082317 - 11082196
Alignment:
| Q |
6 |
catataatgcaatgcataattgtgaaatatatcaaatgtaatgtatgacgagagaacaaaaacctgtaacaaagaaataatataaatgaaaatgacagca |
105 |
Q |
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| T |
11082317 |
catataacgtaatgcataattgtgaactatatcaaatgtaatgtatgatgagagaacaaaaacctctgacaaacaaataatataaatgaaaatgacagaa |
11082218 |
T |
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| Q |
106 |
atttctgaagatgcaaaaccat |
127 |
Q |
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| T |
11082217 |
atttctgaagctacaaaaccat |
11082196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 186 - 363
Target Start/End: Complemental strand, 11082114 - 11081931
Alignment:
| Q |
186 |
atgctcaagtgacatagcactacatctatattctagcatagagaactaggtgatattaaactttcaacacagacttcaggaattcgtttaaaattagtag |
285 |
Q |
| |
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|||||||||||||| ||||| ||||||| || || ||||||||| |||||||| ||||||||||||||||||||| ||||| |||||||||| ||| |
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| T |
11082114 |
atgctcaagtgacaaagcaccacatctacatcttaatatagagaacaaggtgatactaaactttcaacacagacttctggaatatctttaaaattattag |
11082015 |
T |
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| Q |
286 |
ccttgaaagtacccgtcctgggattgtaaagaatcaaattcaagtcaaaatcat------acttcagcaacacttgatcatcct |
363 |
Q |
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|||| ||||||| |||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
11082014 |
ccttcaaagtacggctcctaggattgtaaagaatcaaattcaagtcaaaatcattcataaacttcaacaacacttgatcatcct |
11081931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 1427278 - 1427351
Alignment:
| Q |
50 |
atgacgagagaacaaaaacctgtaacaaagaaataatataaatgaaaatgacagcaatttctgaagatgcaaaa |
123 |
Q |
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|||| |||||||||||||| | ||||||| | ||||||||||||||||| | ||||||||| ||| ||||||| |
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| T |
1427278 |
atgaggagagaacaaaaacttctaacaaacatataatataaatgaaaataatggcaatttctcaagttgcaaaa |
1427351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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